CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_DESPS (NADH-quinone oxidoreductase subunit H OS=Desulfotalea psychrophila GN=nuoH PE=3 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 50/103 (48.54%), Postives = 67/103 (65.05%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWR---------QPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S S+  ++IV +QS  GFW WNLW           PI F++F I SLAE  R PFDL EAE ELVAG+ TEYS + FGLF++  Y N+++ +   T+L+LGG
Sbjct:  164 VSGSVDFIEIVHSQSG-GFWHWNLWPLKPGLFNIFMPISFLIFFICSLAETNRAPFDLGEAESELVAGFHTEYSSMGFGLFFMGEYANIVIGACLTTLLFLGG 265          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: FPOH_METMA (F(420)H(2) oxidoreductase subunit H OS=Methanosarcina mazei GN=fpoH PE=1 SV=1)

HSP 1 Score: 100.138 bits (248), Expect = 1.195e-20
Identity = 47/97 (48.45%), Postives = 72/97 (74.23%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNL 646
            ++ SL+ +DI  AQ   G + WN++ QPIGF+VF I+ +A+  RLPFD  E+EEELVAG+ TEY+G++FGL + A Y+++++ S  V +L+LGG N+
Sbjct:  184 MTGSLNIIDITSAQ---GSFVWNIFLQPIGFVVFFIALMADLGRLPFDQNESEEELVAGWVTEYTGMRFGLVFFAEYMHMILGSFLVALLFLGGWNV 277          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BACWK (NADH-quinone oxidoreductase subunit H OS=Bacillus weihenstephanensis (strain KBAB4) GN=nuoH PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            L+ SL+  +IV AQ K     W ++ QPIGF++FLI+++AE  R PFDLPEAE ELV+GY TEYSG ++  F ++ Y+     S  +TVL+LGG N      +FLG++
Sbjct:  175 LAGSLNLNEIVAAQEKV----WYIFAQPIGFVIFLIAAVAELNRTPFDLPEAESELVSGYHTEYSGFRWAFFMLSEYVYFFGMSSLITVLFLGGWN----PVMFLGFI 274          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_PSYWF (NADH-quinone oxidoreductase subunit H OS=Psychrobacter sp. (strain PRwf-1) GN=nuoH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 44/94 (46.81%), Postives = 66/94 (70.21%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            ++ S +  DIVVAQ   GFW WN++ Q +GF+ F+++ +A   R PFD PEAE+EL  GY  EYSG+KFG+F++  Y+N+++ S  +T L+ GG
Sbjct:  184 MTGSFNLRDIVVAQQG-GFWHWNIFPQFLGFLTFVVAGVAVTHRHPFDQPEAEQELAEGYHVEYSGMKFGMFFIGEYVNVVLISALMTCLFFGG 276          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_GEOTN (NADH-quinone oxidoreductase subunit H OS=Geobacillus thermodenitrificans (strain NG80-2) GN=nuoH PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.663e-20
Identity = 47/108 (43.52%), Postives = 70/108 (64.81%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            L+ S++ VDIV AQ       W ++ QP+ F++F I+++AE  R+PFDLPEAE ELV+G+  EYSG ++  F +A Y+ L   +  +T+L+LGG     H   FLGW+
Sbjct:  174 LAGSMNLVDIVTAQDNV----WFIFAQPLAFLIFFIAAVAELNRVPFDLPEAESELVSGFHVEYSGFRWAFFMLAEYVYLFAMAALITILFLGG----WHPVAFLGWI 273          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_CAMC5 (NADH-quinone oxidoreductase subunit H OS=Campylobacter curvus (strain 525.92) GN=nuoH PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.478e-20
Identity = 43/96 (44.79%), Postives = 69/96 (71.88%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSN 643
            ++ SLS +DI   Q   G +GW +++QP+ F++FL++S  EC R PF L E E E+VAGY TEYSG+++ +F++  Y N++ SS+ +T+++LGG N
Sbjct:  176 ITGSLSLIDINNYQK--GIFGWFVFKQPLAFVLFLMASFVECNRTPFCLTENETEIVAGYGTEYSGMRWAMFFIGEYANMIASSIVITLIFLGGFN 269          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BACCR (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain ATCC 14579 / DSM 31) GN=nuoH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            L+ SL+  +IV AQ K     W ++ QPIGF+VFLI+++AE  R PFDLPEAE ELV+GY TEYSG ++  F ++ Y+     +  +TVL+LGG N      +FLG++
Sbjct:  175 LAGSLNLNEIVAAQEKV----WYIFVQPIGFVVFLIAAVAELNRTPFDLPEAESELVSGYHTEYSGFRWAFFMLSEYVYFFGMASLITVLFLGGWN----PVMFLGFI 274          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BACCN (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus subsp. cytotoxis (strain NVH 391-98) GN=nuoH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 49/96 (51.04%), Postives = 67/96 (69.79%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSN 643
            L+ SL+  +IV +Q K     W ++ QPIGFI+FLI+++AE  R PFDLPEAE ELV+GY TEYSG ++  F +A Y+ L   +  +TVL+LGG N
Sbjct:  175 LTGSLNLNEIVASQEKV----WYIFAQPIGFIIFLIAAVAELNRTPFDLPEAESELVSGYHTEYSGFRWAFFMLAEYVYLFGMASLMTVLFLGGWN 266          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BACC4 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain B4264) GN=nuoH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            L+ SL+  +IV AQ K     W ++ QPIGF+VFLI+++AE  R PFDLPEAE ELV+GY TEYSG ++  F ++ Y+     +  +TVL+LGG N      +FLG++
Sbjct:  175 LAGSLNLNEIVAAQEKV----WYIFVQPIGFVVFLIAAVAELNRTPFDLPEAESELVSGYHTEYSGFRWAFFMLSEYVYFFGMASLITVLFLGGWN----PVMFLGFI 274          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BACC2 (NADH-quinone oxidoreductase subunit H OS=Bacillus cereus (strain G9842) GN=nuoH PE=3 SV=1)

HSP 1 Score: 97.8265 bits (242), Expect = 5.933e-20
Identity = 51/108 (47.22%), Postives = 72/108 (66.67%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWL 679
            L+ SL+  +IV AQ K     W ++ QPIGF+VFLI+++AE  R PFDLPEAE ELV+GY TEYSG ++  F ++ Y+     +  +TVL+LGG N      +FLG++
Sbjct:  175 LAGSLNLNEIVAAQEKV----WYIFVQPIGFVVFLIAAVAELNRTPFDLPEAESELVSGYHTEYSGFRWAFFMLSEYVYFFGMASLITVLFLGGWN----PVMFLGFI 274          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_DESPS7.008e-2148.54NADH-quinone oxidoreductase subunit H OS=Desulfota... [more]
FPOH_METMA1.195e-2048.45F(420)H(2) oxidoreductase subunit H OS=Methanosarc... [more]
NUOH_BACWK2.039e-2047.22NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_PSYWF2.663e-2046.81NADH-quinone oxidoreductase subunit H OS=Psychroba... [more]
NUOH_GEOTN2.663e-2043.52NADH-quinone oxidoreductase subunit H OS=Geobacill... [more]
NUOH_CAMC53.478e-2044.79NADH-quinone oxidoreductase subunit H OS=Campyloba... [more]
NUOH_BACCR5.933e-2047.22NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACCN5.933e-2051.04NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACC45.933e-2047.22NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]
NUOH_BACC25.933e-2047.22NADH-quinone oxidoreductase subunit H OS=Bacillus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
back to top