CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BURP8 (NADH-quinone oxidoreductase subunit H OS=Burkholderia phymatum (strain DSM 17167 / STM815) GN=nuoH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 33/76 (43.42%), Postives = 50/76 (65.79%), Query Frame = 2
Query:  410 FWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            F  WN       F+V+ +S +AE  R PFD+ E E E+VAG+  +YSG+ F LF++A Y+N++V S   ++L+LGG
Sbjct:  205 FLSWNWLPLLPAFVVYFVSGIAETNRHPFDVVEGESEIVAGHMIDYSGMAFALFFLAEYINMIVISALASILFLGG 280          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BORPD (NADH-quinone oxidoreductase subunit H OS=Bordetella petrii (strain ATCC BAA-461 / DSM 12804 / CCUG 43448) GN=nuoH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 39/103 (37.86%), Postives = 65/103 (63.11%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGF---------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S SL+  +IV+ Q++  F         W W L   P+ F++++IS++AE  R PFD+ E E E+VAG+  EYSG+ F LF++  Y N+++ S   ++++LGG
Sbjct:  181 VSGSLNMSEIVLGQTRGWFAEHGLTFLSWNW-LPLLPL-FVIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMILLSCMASIMFLGG 281          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_ACISJ (NADH-quinone oxidoreductase subunit H OS=Acidovorax sp. (strain JS42) GN=nuoH PE=3 SV=1)

HSP 1 Score: 76.2554 bits (186), Expect = 1.849e-13
Identity = 43/103 (41.75%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSK-------YGFWGWNLWRQ--PIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S S++  +IV  Q +        GF  WN W    PI FIV+LIS +AE  R PFD+ E E E+VAG+  EYSG+ F +F++A Y ++ + S+   V++LGG
Sbjct:  184 VSGSMNLTEIVAVQGRGTMTDMGLGFLSWN-WLPLFPI-FIVYLISVVAEVNRHPFDVVEGEAEIVAGHMVEYSGMGFAIFFLAEYASMWLVSILAVVMFLGG 284          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_COXBU (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  386 VVAQSKYGFWGWNLWRQPIG-FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +V +   G W W  W   +  F+ + I+++AE  R PFD+ E E E+VAG+  EY+G+ F LF++A Y N+++ S   TV++LGG
Sbjct:  176 IVLRQSGGLWHW-FWLPLLPLFVTYWITAVAETNRAPFDVAEGESEIVAGFHVEYAGVTFALFFLAEYANMVLVSAIATVIFLGG 259          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_COXBR (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii (strain RSA 331 / Henzerling II) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  386 VVAQSKYGFWGWNLWRQPIG-FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +V +   G W W  W   +  F+ + I+++AE  R PFD+ E E E+VAG+  EY+G+ F LF++A Y N+++ S   TV++LGG
Sbjct:  176 IVLRQSGGLWHW-FWLPLLPLFVTYWITAVAETNRAPFDVAEGESEIVAGFHVEYAGVTFALFFLAEYANMVLVSAIATVIFLGG 259          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_COXBN (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii (strain Dugway 5J108-111) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  386 VVAQSKYGFWGWNLWRQPIG-FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +V +   G W W  W   +  F+ + I+++AE  R PFD+ E E E+VAG+  EY+G+ F LF++A Y N+++ S   TV++LGG
Sbjct:  176 IVLRQSGGLWHW-FWLPLLPLFVTYWITAVAETNRAPFDVAEGESEIVAGFHVEYAGVTFALFFLAEYANMVLVSAIATVIFLGG 259          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_COXB2 (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii (strain CbuG_Q212) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  386 VVAQSKYGFWGWNLWRQPIG-FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +V +   G W W  W   +  F+ + I+++AE  R PFD+ E E E+VAG+  EY+G+ F LF++A Y N+++ S   TV++LGG
Sbjct:  176 IVLRQSGGLWHW-FWLPLLPLFVTYWITAVAETNRAPFDVAEGESEIVAGFHVEYAGVTFALFFLAEYANMVLVSAIATVIFLGG 259          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_COXB1 (NADH-quinone oxidoreductase subunit H OS=Coxiella burnetii (strain CbuK_Q154) GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 34/85 (40.00%), Postives = 54/85 (63.53%), Query Frame = 2
Query:  386 VVAQSKYGFWGWNLWRQPIG-FIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +V +   G W W  W   +  F+ + I+++AE  R PFD+ E E E+VAG+  EY+G+ F LF++A Y N+++ S   TV++LGG
Sbjct:  176 IVLRQSGGLWHW-FWLPLLPLFVTYWITAVAETNRAPFDVAEGESEIVAGFHVEYAGVTFALFFLAEYANMVLVSAIATVIFLGG 259          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BORPE (NADH-quinone oxidoreductase subunit H OS=Bordetella pertussis GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGF---------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S SL+  +IV+ Q +  F         W W L   P+ FI+++IS++AE  R PFD+ E E E+VAG+  EYSG+ F LF++  Y N+++ S    +++LGG
Sbjct:  181 VSGSLNMSEIVLGQGRGWFAERGLTFLSWNW-LPLLPL-FIIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMILLSCMAAIMFLGG 281          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NUOH_BORPA (NADH-quinone oxidoreductase subunit H OS=Bordetella parapertussis GN=nuoH PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 2.414e-13
Identity = 40/103 (38.83%), Postives = 63/103 (61.17%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGF---------WGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGG 637
            +S SL+  +IV+ Q +  F         W W L   P+ FI+++IS++AE  R PFD+ E E E+VAG+  EYSG+ F LF++  Y N+++ S    +++LGG
Sbjct:  181 VSGSLNMSEIVLGQGRGWFAERGLTFLSWNW-LPLLPL-FIIYVISAVAETNRHPFDVVEGESEIVAGHMVEYSGMAFALFFLGEYANMILLSCMAAIMFLGG 281          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NUOH_BURP81.849e-1343.42NADH-quinone oxidoreductase subunit H OS=Burkholde... [more]
NUOH_BORPD1.849e-1337.86NADH-quinone oxidoreductase subunit H OS=Bordetell... [more]
NUOH_ACISJ1.849e-1341.75NADH-quinone oxidoreductase subunit H OS=Acidovora... [more]
NUOH_COXBU2.414e-1340.00NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_COXBR2.414e-1340.00NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_COXBN2.414e-1340.00NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_COXB22.414e-1340.00NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_COXB12.414e-1340.00NADH-quinone oxidoreductase subunit H OS=Coxiella ... [more]
NUOH_BORPE2.414e-1338.83NADH-quinone oxidoreductase subunit H OS=Bordetell... [more]
NUOH_BORPA2.414e-1338.83NADH-quinone oxidoreductase subunit H OS=Bordetell... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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