CX291464

Overview
NameCX291464
Unique NameCX291464
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length707
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_HORVU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Hordeum vulgare GN=ndhA PE=2 SV=4)

HSP 1 Score: 184.496 bits (467), Expect = 4.820e-46
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYGF+GWN+WRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG N SI
Sbjct:  184 LSNSLSTVDIVEAQSKYGFFGWNIWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNFSI 282          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_AGRST (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Agrostis stolonifera GN=ndhA PE=3 SV=1)

HSP 1 Score: 183.726 bits (465), Expect = 8.221e-46
Identity = 90/99 (90.91%), Postives = 95/99 (95.96%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGF+GWN+WRQPIGF+VFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIK+GLFY+ SYLNLLVSSLFVTVLYLGG NLSI
Sbjct:  184 LSNSSSTVDIVEAQSKYGFFGWNIWRQPIGFLVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKYGLFYLVSYLNLLVSSLFVTVLYLGGWNLSI 282          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_POPAL (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus alba GN=ndhA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.074e-45
Identity = 91/99 (91.92%), Postives = 93/99 (93.94%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYGF GWNLWRQPIGFI+F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV VLYLGG N+SI
Sbjct:  185 LSNSSSTVDIVEAQSKYGFGGWNLWRQPIGFIIFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVAVLYLGGWNISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PHYPA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Physcomitrella patens GN=ndhA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.074e-45
Identity = 90/111 (81.08%), Postives = 98/111 (88.29%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYL---FLGWL 679
            LSNSLSTVDIV AQ+KYGFWGWN+WRQPIGF+ F I+SLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLL SSLFVT+LYLGG + SI   L   +L W+
Sbjct:  187 LSNSLSTVDIVEAQAKYGFWGWNVWRQPIGFLAFFIASLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLASSLFVTILYLGGWHFSIPFLLNSNYLEWV 297          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PELHO (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Pelargonium hortorum GN=ndhA PE=3 SV=1)

HSP 1 Score: 183.341 bits (464), Expect = 1.074e-45
Identity = 88/105 (83.81%), Postives = 94/105 (89.52%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFL 670
            LSNS STVDI+ AQSKYGFWGWNLWRQPIGF++FLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKF  FY+ SY NLLVSSLFVT+LYLGG N+SI    FL
Sbjct:  185 LSNSSSTVDIIEAQSKYGFWGWNLWRQPIGFLIFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFAFFYITSYFNLLVSSLFVTILYLGGWNMSIPYIDFL 289          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_POPTR (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Populus trichocarpa GN=ndhA PE=3 SV=1)

HSP 1 Score: 181.03 bits (458), Expect = 5.329e-45
Identity = 90/99 (90.91%), Postives = 92/99 (92.93%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNS STVDIV AQSKYG  GWNLWRQPIGFI+F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFV VLYLGG N+SI
Sbjct:  185 LSNSSSTVDIVEAQSKYGLGGWNLWRQPIGFIIFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVAVLYLGGWNISI 283          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ADICA (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Adiantum capillus-veneris GN=ndhA PE=2 SV=2)

HSP 1 Score: 179.874 bits (455), Expect = 1.187e-44
Identity = 88/99 (88.89%), Postives = 89/99 (89.90%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LS SLSTVDIV  QSKYGFWGWNLWRQPIGFI F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYV SYLNLL SSLFV VLYLGG + SI
Sbjct:  187 LSGSLSTVDIVETQSKYGFWGWNLWRQPIGFIAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVGSYLNLLASSLFVVVLYLGGWDFSI 285          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_ANGEV (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Angiopteris evecta GN=ndhA PE=3 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.645e-44
Identity = 89/99 (89.90%), Postives = 92/99 (92.93%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYG  GWNLWRQPIGF++F ISSLAECERLPFD PEAEEELVAGYQTEYSGIKFGLFYV SYLNLLVSSLFVTVLYLGG +LSI
Sbjct:  187 LSNSLSTVDIVDAQSKYGLLGWNLWRQPIGFLIFFISSLAECERLPFDPPEAEEELVAGYQTEYSGIKFGLFYVGSYLNLLVSSLFVTVLYLGGWDLSI 285          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_HUPLU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Huperzia lucidula GN=ndhA PE=3 SV=1)

HSP 1 Score: 176.792 bits (447), Expect = 1.005e-43
Identity = 91/115 (79.13%), Postives = 96/115 (83.48%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSIHTYLFLGWLK*ISGWN 700
            LSNSLSTVDIV AQSKYGFWGWN WRQPIGF+ F ISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVAS+ NLL SSL  T+LYLGG N  I  +LFL     + GWN
Sbjct:  186 LSNSLSTVDIVEAQSKYGFWGWNSWRQPIGFVAFFISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASHPNLLTSSLSATILYLGGWNSPI-PFLFLPKFDRL-GWN 298          
BLAST of CX291464 vs. ExPASy Swiss-Prot
Match: NU1C_PSINU (NAD(P)H-quinone oxidoreductase subunit 1, chloroplastic OS=Psilotum nudum GN=ndhA PE=3 SV=1)

HSP 1 Score: 176.407 bits (446), Expect = 1.313e-43
Identity = 85/99 (85.86%), Postives = 92/99 (92.93%), Query Frame = 2
Query:  356 LSNSLSTVDIVVAQSKYGFWGWNLWRQPIGFIVFLISSLAECERLPFDLPEAEEELVAGYQTEYSGIKFGLFYVASYLNLLVSSLFVTVLYLGGSNLSI 652
            LSNSLSTVDIV AQSKYG  GWNLWRQP+GFIVF++SSLAECERLPFDLPEAEEELVAGYQTEYS IKFG F++ SYLNLLVSSLFVTVLYLGG +LS+
Sbjct:  187 LSNSLSTVDIVEAQSKYGILGWNLWRQPVGFIVFIVSSLAECERLPFDLPEAEEELVAGYQTEYSSIKFGFFFIGSYLNLLVSSLFVTVLYLGGWDLSL 285          
The following BLAST results are available for this feature:
BLAST of CX291464 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NU1C_HORVU4.820e-4690.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_AGRST8.221e-4690.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_POPAL1.074e-4591.92NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PHYPA1.074e-4581.08NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PELHO1.074e-4583.81NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_POPTR5.329e-4590.91NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ADICA1.187e-4488.89NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_ANGEV2.645e-4489.90NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_HUPLU1.005e-4379.13NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]
NU1C_PSINU1.313e-4385.86NAD(P)H-quinone oxidoreductase subunit 1, chloropl... [more]

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Properties
Property NameValue
Genbank descriptionC03008G11SK OF2 Citrus clementina cDNA clone C03008G11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291464 ID=CX291464; Name=CX291464; organism=Citrus clementina; type=EST; length=707bp
GTAATCGAAAATAAAAGGATGGGTTGAACTATCGAGTGATATTTCTACAA
GAGTATTTTATTGAAGGGTTGATTAAGTTATTACTCAACACAGAAAATTT
GAAATTCGTAAAGGATGAGATTAATTCAGAAATACTGTTTTTTTATCCTT
AGAGCAGACAGAATTCCAGTGGTATAATTGGGGATCCTCCGCTAGATTTT
GACTTTATCCATCCTATAACCATATCAAAATCAAAATAACTAATACCGGT
CCGGTCCTTACATTTATTTGTGGCCCTGAGGAGCCGTATGAGGTGAAAAT
CTCATGTACGGTTTTGTAATAGCGATGGAAACCGTAATGTTACCACCGAC
TATGATTATCTAACAGTTTAAGTACAGTTGATATAGTTGTGGCGCAATCA
AAATATGGTTTTTGGGGGTGGAATTTGTGGCGTCAACCTATAGGGTTTAT
CGTTTTTCTAATTTCTTCCCTAGCGGAATGCGAGAGATTACCTTTTGATT
TACCAGAAGCGGAAGAAGAATTAGTAGCCGGTTATCAAACCGAATATTCA
GGAATCAAATTTGGTTTATTTTACGTTGCTTCCTATCTAAATCTACTAGT
TTCCTCATTATTTGTAACAGTTCTTTACTTGGGAGGTTCGAATCTTTCCA
TTCATACATATTTGTTCCTGGGCTGGTTGAAATAAATAAGCGGATGGAAT
CTTTGGA
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