CX291470

Overview
NameCX291470
Unique NameCX291470
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_SALAR (Phosphoglycerate kinase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 AEDQSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            A  Q  +E L   KTI+WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  289 ASAQQLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_SALA4 (Phosphoglycerate kinase OS=Salmonella agona (strain SL483) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 AEDQSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            A  Q  +E L   KTI+WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  289 ASAQQLAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_PSEU2 (Phosphoglycerate kinase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 49/92 (53.26%), Postives = 69/92 (75.00%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 297
            F+E L ++ TI+WNGP+GVFEFD+F  GT+ +AK +AE       +I GGGD++AA++K G+A ++S+ISTGGGA LE +EGK LP V  L+
Sbjct:  294 FAELLKSSGTILWNGPVGVFEFDQFGEGTKTLAKAIAESQA---FSIAGGGDTLAAIDKYGVAQQISYISTGGGAFLEFVEGKVLPAVEVLE 382          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_NITOC (Phosphoglycerate kinase OS=Nitrosococcus oceani (strain ATCC 19707 / NCIMB 11848) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 52/97 (53.61%), Postives = 69/97 (71.13%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDDA*TQ 312
            F+E L    TI+WNGP+GVFEFD+F  GT+A+A  +AE       +I GGGD++AAV K G+ D++S+ISTGGGA LE LEGK LP V  L++  +Q
Sbjct:  299 FAEILKGAGTIVWNGPVGVFEFDQFGEGTKALALAIAE---SPAFSIAGGGDTLAAVAKYGVGDQVSYISTGGGAFLEFLEGKQLPAVAILEERASQ 392          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_GEOSM (Phosphoglycerate kinase OS=Geobacter sp. (strain M21) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            F+EAL   KTI+WNGPMGVFE D F+ GT A+   +A        TI+GGGD+  AV + G   K+S+ISTGGGA LELLEGK LPG+  L+D
Sbjct:  306 FTEALQNAKTIVWNGPMGVFEMDAFSRGTFAMVSAVAN---SYALTIVGGGDTDVAVHRAGEYAKISYISTGGGAFLELLEGKKLPGIKVLED 395          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_GEOBB (Phosphoglycerate kinase OS=Geobacter bemidjiensis (strain Bem / ATCC BAA-1014 / DSM 16622) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 52/93 (55.91%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            F+EAL   KTI+WNGPMGVFE D F+ GT A+   +A        TI+GGGD+  AV + G   K+S+ISTGGGA LELLEGK LPG+  L+D
Sbjct:  306 FTEALQNAKTIVWNGPMGVFEMDAFSRGTFAMVSAVAN---SYALTIVGGGDTDVAVHRAGEYAKISYISTGGGAFLELLEGKKLPGIKVLED 395          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_ECOLI (Phosphoglycerate kinase OS=Escherichia coli (strain K12) GN=pgk PE=1 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 AEDQSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            A  Q  +E L   KTI+WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  289 ASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_ECOLC (Phosphoglycerate kinase OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 AEDQSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            A  Q  +E L   KTI+WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  289 ASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_ECOL6 (Phosphoglycerate kinase OS=Escherichia coli O6 GN=pgk PE=3 SV=2)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 AEDQSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            A  Q  +E L   KTI+WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  289 ASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_ECOL5 (Phosphoglycerate kinase OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=pgk PE=3 SV=1)

HSP 1 Score: 102.064 bits (253), Expect = 2.512e-21
Identity = 50/98 (51.02%), Postives = 67/98 (68.37%), Query Frame = 1
Query:    7 AEDQSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            A  Q  +E L   KTI+WNGP+GVFEF  F  GTE +A  +A+       +I GGGD++AA++  G+ADK+S+ISTGGGA LE +EGK LP V  L++
Sbjct:  289 ASAQELAEILKNAKTILWNGPVGVFEFPNFRKGTEIVANAIADSEA---FSIAGGGDTLAAIDLFGIADKISYISTGGGAFLEFVEGKVLPAVAMLEE 383          
The following BLAST results are available for this feature:
BLAST of CX291470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_SALAR2.512e-2151.02Phosphoglycerate kinase OS=Salmonella arizonae (st... [more]
PGK_SALA42.512e-2151.02Phosphoglycerate kinase OS=Salmonella agona (strai... [more]
PGK_PSEU22.512e-2153.26Phosphoglycerate kinase OS=Pseudomonas syringae pv... [more]
PGK_NITOC2.512e-2153.61Phosphoglycerate kinase OS=Nitrosococcus oceani (s... [more]
PGK_GEOSM2.512e-2155.91Phosphoglycerate kinase OS=Geobacter sp. (strain M... [more]
PGK_GEOBB2.512e-2155.91Phosphoglycerate kinase OS=Geobacter bemidjiensis ... [more]
PGK_ECOLI2.512e-2151.02Phosphoglycerate kinase OS=Escherichia coli (strai... [more]
PGK_ECOLC2.512e-2151.02Phosphoglycerate kinase OS=Escherichia coli (strai... [more]
PGK_ECOL62.512e-2151.02Phosphoglycerate kinase OS=Escherichia coli O6 GN=... [more]
PGK_ECOL52.512e-2151.02Phosphoglycerate kinase OS=Escherichia coli O6:K15... [more]

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Properties
Property NameValue
Genbank descriptionC03009A04SK OF2 Citrus clementina cDNA clone C03009A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291470 ID=CX291470; Name=CX291470; organism=Citrus clementina; type=EST; length=627bp
GATTCGGCCGAGGATCAGTCATTCAGTGAAGCTTTGGATACTACTAAAAC
CATCATCTGGAATGGACCTATGGGTGTGTTTGAATTTGATAAATTTGCTG
CTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAGCGGGAAGGGA
GTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCCGTAGAGAAGGT
TGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGGTGGAGCCAGCT
TAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTGCTCTTGATGAT
GCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTGCCATTTCCAGA
GTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAAAGTTAAACTTT
ATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAAATAAATTCTTT
CTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGATCCCATTTTGG
AACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAAGTTCTTGTTCC
TTTCTGATCACAATGAGCCGTTGATGATTGTTAGATAATGCATGAATCCT
GGCACTACAAAAAAAAAAAAAAAAAAA
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