CX291470

Overview
NameCX291470
Unique NameCX291470
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_JANMA (Phosphoglycerate kinase OS=Janthinobacterium sp. (strain Marseille) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.126e-20
Identity = 48/84 (57.14%), Postives = 62/84 (73.81%), Query Frame = 1
Query:   49 TIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            TI+WNGP+GVFEFD+FA GT+ +A  +AE  G  V    GGGD++AA+ K  + DK+ +ISTGGGA LE LEGKTLP V  L++
Sbjct:  313 TIVWNGPVGVFEFDQFANGTKTLAYAIAESKGFSVA---GGGDTLAAIAKYDIGDKIDYISTGGGAFLEFLEGKTLPAVAILEE 393          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGKC_CRIFA (Phosphoglycerate kinase, glycosomal OS=Crithidia fasciculata GN=PGKC PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.126e-20
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 294
            + + +   K+ IWNGPMGVFE   ++ GT A+AK +   + K G+ +IIGGGD+ +A E  G A  MSH+STGGGASLELLEGK+LPGV  L
Sbjct:  322 YEDVIAKCKSTIWNGPMGVFEMPCYSKGTFAVAKAMGNGTQKNGLMSIIGGGDTASAAELSGEAKNMSHVSTGGGASLELLEGKSLPGVTVL 413          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGKB_CRIFA (Phosphoglycerate kinase, cytosolic OS=Crithidia fasciculata GN=PGKB PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.126e-20
Identity = 50/92 (54.35%), Postives = 65/92 (70.65%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGK-GVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 294
            + + +   K+ IWNGPMGVFE   ++ GT A+AK +   + K G+ +IIGGGD+ +A E  G A  MSH+STGGGASLELLEGK+LPGV  L
Sbjct:  322 YEDVIAKCKSTIWNGPMGVFEMPCYSKGTFAVAKAMGNGTQKNGLMSIIGGGDTASAAELSGEAKNMSHVSTGGGASLELLEGKSLPGVTVL 413          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_XANAC (Phosphoglycerate kinase OS=Xanthomonas axonopodis pv. citri GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 49/93 (52.69%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   16 QSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 294
            Q ++E + +  T++WNGP+GVFEF+ F+ GTE +A+ +A  S K  + I GGGD++AAV+K  +A  +++ISTGGGA LE LEGKTLP V AL
Sbjct:  297 QRYAELIASAGTVVWNGPVGVFEFESFSHGTETLARAIA--SSKAFS-IAGGGDTLAAVDKYDIAQDVTYISTGGGAFLEFLEGKTLPAVAAL 386          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_THERP (Phosphoglycerate kinase OS=Thermomicrobium roseum (strain ATCC 27502 / DSM 5159 / P-2) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 45/93 (48.39%), Postives = 69/93 (74.19%), Query Frame = 1
Query:   16 QSFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 294
            +++S  +   + ++WNGPMGV+E  +F  GT+ IA+ +A  SG    T++GGGDS AA++++GLA+++ H+STGGGA+LE LEG+ LPGV  L
Sbjct:  299 RAYSAVIAGARLLVWNGPMGVYEVPEFREGTKGIAEAVAGCSG---FTLVGGGDSAAALQELGLAERVGHLSTGGGATLEYLEGRELPGVAVL 388          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_SYNFM (Phosphoglycerate kinase OS=Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB) GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            F   L   +TI+WNGP+G FE   F  GT A+A+ L  L      T+IGGGDS AAV++  + DK+S++STGGGA LE+LEG TLPGV AL++
Sbjct:  303 FESVLKNCRTIVWNGPLGAFETPPFNKGTFALAEFLGSLDA---LTVIGGGDSAAAVKQANMEDKVSYVSTGGGAFLEMLEGITLPGVAALEE 392          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_STRCO (Phosphoglycerate kinase OS=Streptomyces coelicolor GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 50/94 (53.19%), Postives = 64/94 (68.09%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADK-MSHISTGGGASLELLEGKTLPGVLALDD 300
            ++  L    T+ WNGPMGVFE   +A GT+A+A+ L +  G    T++GGGDS AAV  +G  +    HISTGGGASLE LEGKTLPG+ AL+D
Sbjct:  313 YASKLADAGTVFWNGPMGVFEHPDYAEGTKAVAQALVDAPG---FTVVGGGDSAAAVRTLGFDENAFGHISTGGGASLEYLEGKTLPGLAALED 403          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_PHOPR (Phosphoglycerate kinase OS=Photobacterium profundum GN=pgk PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 48/92 (52.17%), Postives = 64/92 (69.57%), Query Frame = 1
Query:   25 SEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALDD 300
            +E +   KTI+WNGP+GVFEF  F AGT  IAK +A+  G  V    GGGD++AA++K G+   +S+ISTGGGA LE +EGK LP V  L++
Sbjct:  300 AEIISNAKTILWNGPVGVFEFKNFEAGTAGIAKAIADSEGFSVA---GGGDTLAAIDKFGIKADVSYISTGGGAFLEFVEGKVLPAVAMLEE 388          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_PENCI (Phosphoglycerate kinase OS=Penicillium citrinum GN=PGKA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 48/91 (52.75%), Postives = 59/91 (64.84%), Query Frame = 1
Query:   22 FSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLAL 294
            + + +   KTI+WNGP GVFE   FA+ TEA      + +  G   IIGGGD+     K  + DK+SH+STGGGASLELLEGK LPGV AL
Sbjct:  324 YQKTIAEAKTILWNGPPGVFELKPFASATEATLDAAVKAAESGSIVIIGGGDTATVAAKYKVEDKISHVSTGGGASLELLEGKELPGVAAL 414          
BLAST of CX291470 vs. ExPASy Swiss-Prot
Match: PGK_NEIMB (Phosphoglycerate kinase OS=Neisseria meningitidis serogroup B GN=pgk PE=3 SV=2)

HSP 1 Score: 98.5969 bits (244), Expect = 2.777e-20
Identity = 46/93 (49.46%), Postives = 68/93 (73.12%), Query Frame = 1
Query:   19 SFSEALDTTKTIIWNGPMGVFEFDKFAAGTEAIAKKLAELSGKGVTTIIGGGDSVAAVEKVGLADKMSHISTGGGASLELLEGKTLPGVLALD 297
            + ++ L    T++WNGP+GVFEFD+FA GT+A+A+ +A+       +I GGGD++AA+ K G+ +++ +ISTGGGA LE LEGK LP V AL+
Sbjct:  299 ALADLLKAAGTVVWNGPVGVFEFDQFAGGTKALAEAIAQSKA---FSIAGGGDTLAAIAKFGVTEQIGYISTGGGAFLEFLEGKELPAVAALE 388          
The following BLAST results are available for this feature:
BLAST of CX291470 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
PGK_JANMA2.126e-2057.14Phosphoglycerate kinase OS=Janthinobacterium sp. (... [more]
PGKC_CRIFA2.126e-2054.35Phosphoglycerate kinase, glycosomal OS=Crithidia f... [more]
PGKB_CRIFA2.126e-2054.35Phosphoglycerate kinase, cytosolic OS=Crithidia fa... [more]
PGK_XANAC2.777e-2052.69Phosphoglycerate kinase OS=Xanthomonas axonopodis ... [more]
PGK_THERP2.777e-2048.39Phosphoglycerate kinase OS=Thermomicrobium roseum ... [more]
PGK_SYNFM2.777e-2052.69Phosphoglycerate kinase OS=Syntrophobacter fumarox... [more]
PGK_STRCO2.777e-2053.19Phosphoglycerate kinase OS=Streptomyces coelicolor... [more]
PGK_PHOPR2.777e-2052.17Phosphoglycerate kinase OS=Photobacterium profundu... [more]
PGK_PENCI2.777e-2052.75Phosphoglycerate kinase OS=Penicillium citrinum GN... [more]
PGK_NEIMB2.777e-2049.46Phosphoglycerate kinase OS=Neisseria meningitidis ... [more]

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Properties
Property NameValue
Genbank descriptionC03009A04SK OF2 Citrus clementina cDNA clone C03009A04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291470 ID=CX291470; Name=CX291470; organism=Citrus clementina; type=EST; length=627bp
GATTCGGCCGAGGATCAGTCATTCAGTGAAGCTTTGGATACTACTAAAAC
CATCATCTGGAATGGACCTATGGGTGTGTTTGAATTTGATAAATTTGCTG
CTGGCACTGAGGCAATTGCCAAGAAGCTTGCGGAGCTCAGCGGGAAGGGA
GTGACCACAATCATTGGAGGAGGTGACTCAGTTGCAGCCGTAGAGAAGGT
TGGTCTGGCTGACAAGATGAGCCATATCTCCACTGGAGGTGGAGCCAGCT
TAGAGCTCCTTGAGGGCAAAACACTCCCTGGTGTGCTTGCTCTTGATGAT
GCTTAAACCCAGTTCCTGGACTTTCCTTTTTTAAATGTGCCATTTCCAGA
GTTGTATGTGTGGCTGGTTGTCAGCCCAGAGTGGATAAAAGTTAAACTTT
ATCATTAGAGTTGGTTTTGTAGATGCTGTAAGAGTAAAAATAAATTCTTT
CTCACAGGCATCAATGGTGATGCATTTTTCTGGATTTGATCCCATTTTGG
AACATTGTGATGGTAAGGCTATAAGTTTCCTGAAGTCAAGTTCTTGTTCC
TTTCTGATCACAATGAGCCGTTGATGATTGTTAGATAATGCATGAATCCT
GGCACTACAAAAAAAAAAAAAAAAAAA
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