CX291473

Overview
NameCX291473
Unique NameCX291473
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length639
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_MAGSM (Acyl carrier protein OS=Magnetococcus sp. (strain MC-1) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 36/71 (50.70%), Postives = 48/71 (67.61%), Query Frame = 2
Query:  143 EVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYI 355
            ++ +RV  +V     VD  +VT D  F +DLG DSLDNVE+VMA EEEF  EIPD+ A +I + + AI+YI
Sbjct:    3 DIAERVKKIVAEQMGVDLDKVTDDAKFVEDLGADSLDNVELVMAFEEEFGCEIPDETAEKITSVSDAIKYI 73          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_HELPJ (Acyl carrier protein OS=Helicobacter pylori J99 GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 32/62 (51.61%), Postives = 46/62 (74.19%), Query Frame = 2
Query:  188 VDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMA 373
            VD +QVTP+  F KDLG DSLD VE++MALEE+F +EIPD++A +I      ++YI ++ +A
Sbjct:   17 VDAAQVTPEAEFVKDLGADSLDVVELIMALEEKFNIEIPDEQAEKIVNVGDVVKYIEDNKLA 78          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_HALHL (Acyl carrier protein OS=Halorhodospira halophila (strain DSM 244 / SL1) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 36/71 (50.70%), Postives = 45/71 (63.38%), Query Frame = 2
Query:  152 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 364
            DRV  +V     V   +VT +  F  DLG DSLD VE+VMALEEEF+ EIPD+EA +I     A++YI  H
Sbjct:    6 DRVKKIVVEQLGVKEEEVTGEASFVDDLGADSLDTVELVMALEEEFECEIPDEEAEKITTVQQAVDYIKKH 76          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_GEOSL (Acyl carrier protein OS=Geobacter sulfurreducens GN=acpP PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 37/70 (52.86%), Postives = 45/70 (64.29%), Query Frame = 2
Query:  155 RVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 364
            RV  +V     VD +QVT D  F  DLG DSLD VE+VMALEEEF +EI D++A +I     AI+YI  H
Sbjct:    7 RVKEIVAEQLGVDEAQVTNDASFMDDLGADSLDTVELVMALEEEFDIEISDEDAEKIQNVQDAIDYITEH 76          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_ANASP (Acyl carrier protein OS=Anabaena sp. (strain PCC 7120) GN=acpP PE=3 SV=2)

HSP 1 Score: 67.3958 bits (163), Expect = 7.068e-11
Identity = 36/83 (43.37%), Postives = 51/83 (61.45%), Query Frame = 2
Query:  131 LTKEEVIDRVLSVV-KCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNHPMAS 376
            +++ E  ++V  +V +     +P  VTP+  F  DL  DSLD VE+VMALEEEF +EIPD+ A +I     A++YI N   AS
Sbjct:    1 MSQSETFEKVKKIVIEQLSVENPDTVTPEASFANDLQADSLDTVELVMALEEEFDIEIPDEAAEKITTVQEAVDYINNQVAAS 83          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_LACJO (Acyl carrier protein OS=Lactobacillus johnsonii GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 30/78 (38.46%), Postives = 51/78 (65.38%), Query Frame = 2
Query:  131 LTKEEVIDRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 364
            +T+EE+ +++  ++     +D  ++T D++FQ DL  DS+D VE+VM LE+ F  EIPD +A ++     A+EYI +H
Sbjct:    1 MTEEEIFNKIADMISERFSIDRDKITKDLNFQNDLDADSIDFVELVMDLEDTFGAEIPDDDAEKLQTVGEAVEYIKSH 78          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_HAEIN (Acyl carrier protein OS=Haemophilus influenzae GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  152 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 364
            +RV  ++     V    V P+  F +DLG DSLD VE+VMALEEEF +EIPD+EA +I     AI+Y+ N+
Sbjct:    5 ERVKKIIVEQLGVKEEDVKPEASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKITTVQSAIDYVQNN 75          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_HAEIG (Acyl carrier protein OS=Haemophilus influenzae (strain PittGG) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  152 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 364
            +RV  ++     V    V P+  F +DLG DSLD VE+VMALEEEF +EIPD+EA +I     AI+Y+ N+
Sbjct:    5 ERVKKIIVEQLGVKEEDVKPEASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKITTVQSAIDYVQNN 75          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_HAEIE (Acyl carrier protein OS=Haemophilus influenzae (strain PittEE) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  152 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 364
            +RV  ++     V    V P+  F +DLG DSLD VE+VMALEEEF +EIPD+EA +I     AI+Y+ N+
Sbjct:    5 ERVKKIIVEQLGVKEEDVKPEASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKITTVQSAIDYVQNN 75          
BLAST of CX291473 vs. ExPASy Swiss-Prot
Match: ACP_HAEI8 (Acyl carrier protein OS=Haemophilus influenzae (strain 86-028NP) GN=acpP PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 9.231e-11
Identity = 34/71 (47.89%), Postives = 46/71 (64.79%), Query Frame = 2
Query:  152 DRVLSVVKCFPKVDPSQVTPDVHFQKDLGLDSLDNVEIVMALEEEFKLEIPDKEAVRIDACNLAIEYIYNH 364
            +RV  ++     V    V P+  F +DLG DSLD VE+VMALEEEF +EIPD+EA +I     AI+Y+ N+
Sbjct:    5 ERVKKIIVEQLGVKEEDVKPEASFVEDLGADSLDTVELVMALEEEFDIEIPDEEAEKITTVQSAIDYVQNN 75          
The following BLAST results are available for this feature:
BLAST of CX291473 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 54
Match NameE-valueIdentityDescription
ACP_MAGSM7.068e-1150.70Acyl carrier protein OS=Magnetococcus sp. (strain ... [more]
ACP_HELPJ7.068e-1151.61Acyl carrier protein OS=Helicobacter pylori J99 GN... [more]
ACP_HALHL7.068e-1150.70Acyl carrier protein OS=Halorhodospira halophila (... [more]
ACP_GEOSL7.068e-1152.86Acyl carrier protein OS=Geobacter sulfurreducens G... [more]
ACP_ANASP7.068e-1143.37Acyl carrier protein OS=Anabaena sp. (strain PCC 7... [more]
ACP_LACJO9.231e-1138.46Acyl carrier protein OS=Lactobacillus johnsonii GN... [more]
ACP_HAEIN9.231e-1147.89Acyl carrier protein OS=Haemophilus influenzae GN=... [more]
ACP_HAEIG9.231e-1147.89Acyl carrier protein OS=Haemophilus influenzae (st... [more]
ACP_HAEIE9.231e-1147.89Acyl carrier protein OS=Haemophilus influenzae (st... [more]
ACP_HAEI89.231e-1147.89Acyl carrier protein OS=Haemophilus influenzae (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03009A12SK OF2 Citrus clementina cDNA clone C03009A12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291473 ID=CX291473; Name=CX291473; organism=Citrus clementina; type=EST; length=639bp
GAGGATGGCCTTGAGAAGAGCTGTGCTTGACCACGTTCGAGTACCAGTAC
AAACCCTAGCCTTAACCGGATCCAAACAGCGATGGAGTGTGTTAGGTTCT
CTGCGTTTCATGTCATCCCACGACGATCATTTGACCAAAGAAGAGGTCAT
TGACAGAGTGCTCTCTGTTGTCAAGTGCTTCCCCAAAGTCGATCCCTCCC
AGGTGACTCCTGATGTGCATTTCCAGAAGGATTTGGGCTTGGATAGCTTG
GACAATGTGGAGATTGTAATGGCGCTAGAAGAGGAGTTCAAGCTTGAAAT
CCCTGACAAGGAAGCTGTTAGGATTGATGCGTGTAATCTTGCCATTGAGT
ACATCTACAATCATCCGATGGCTAGTTAATTTGAATAAGGAAGTTTCTCT
TCTTGAATTTATTGTGGGGGCATCAAGAAAAAAAATTATCTGTTCTACCC
TGTTTTTTGTAGGCTTTGCATATGATCTCTGTAAGGTAGATGGAAAATAA
TCCAAATCTGTCTGATAATGAGTAGAATTTGAAGAACCCATGTCTCATGA
CGTCTGTTGTTTTTCTGCTGTAATCCAATTCTGCATTTGGATGCTTGATC
TGGTGACATTTTATCATTGTCCTCCTTTGAGAAAAAAAA
back to top