CX291476

Overview
NameCX291476
Unique NameCX291476
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length212
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RGPD4_HUMAN (RANBP2-like and GRIP domain-containing protein 4 OS=Homo sapiens GN=RGPD4 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.361e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            R+DKD  QWKERG G +K+L++    + R+VMR+ + LK+ ANH + P MS+Q   G ++  V TA D+
Sbjct: 1366 RYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHTITPDMSLQNMKGTERVWVWTACDF 1434
[Close]
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RBP2_BOVIN (E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos taurus GN=RANBP2 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.361e-11
Identity = 30/69 (43.48%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            R+DKD  QWKERG G +K+L++    + R+VMR+ + LK+ ANH + P M++Q   G ++  V TA D+
Sbjct:  206 RYDKDAGQWKERGIGDIKILQNYENKQVRIVMRRDQVLKLCANHRITPDMTLQNMKGTERVWVWTACDF 274
[Close]
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RGPD8_HUMAN (RANBP2-like and GRIP domain-containing protein 8 (Fragment) OS=Homo sapiens GN=RGPD8 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            R+DKD  QWKERG G +K+L++    + R+VMR+ + LK+ ANH + P MS+Q   G ++  V TA D+
Sbjct:  355 RYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDF 423
[Close]
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RGPD6_HUMAN (RANBP2-like and GRIP domain-containing protein 6 OS=Homo sapiens GN=RGPD6 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            R+DKD  QWKERG G +K+L++    + R+VMR+ + LK+ ANH + P MS+Q   G ++  V TA D+
Sbjct: 1365 RYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDF 1433
[Close]
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RGPD5_HUMAN (RANBP2-like and GRIP domain-containing protein 5 OS=Homo sapiens GN=RGPD5 PE=1 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            R+DKD  QWKERG G +K+L++    + R+VMR+ + LK+ ANH + P MS+Q   G ++  V TA D+
Sbjct: 1365 RYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDF 1433
[Close]
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RGPD2_HUMAN (RANBP2-like and GRIP domain-containing protein 2 OS=Homo sapiens GN=RGPD2 PE=2 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            R+DKD  QWKERG G +K+L++    + R+VMR+ + LK+ ANH + P MS+Q   G ++  V TA D+
Sbjct:  615 RYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDF 683
[Close]
BLAST of CX291476 vs. ExPASy Swiss-Prot
Match: RGPD1_HUMAN (RANBP2-like and GRIP domain-containing protein 1 OS=Homo sapiens GN=RGPD1 PE=1 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.695e-11
Identity = 31/69 (44.93%), Postives = 46/69 (66.67%), Query Frame = 3 
Query:    3 RFDKDGNQWKERGAGTVKLLKHKVTDKARLVMRQSKTLKI*ANHLVLPMMSVQEHAGNDKSPVPTAADY 209
            R+DKD  QWKERG G +K+L++    + R+VMR+ + LK+ ANH + P MS+Q   G ++  V TA D+
Sbjct: 1350 RYDKDVGQWKERGIGDIKILQNYDNKQVRIVMRRDQVLKLCANHRITPDMSLQNMKGTERVWVWTACDF 1418
The following BLAST results are available for this feature:
BLAST of CX291476 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
RGPD4_HUMAN4.361e-1144.93RANBP2-like and GRIP domain-containing protein 4 O... [more]
RBP2_BOVIN4.361e-1143.48E3 SUMO-protein ligase RANBP2 (Fragment) OS=Bos ta... [more]
RGPD8_HUMAN5.695e-1144.93RANBP2-like and GRIP domain-containing protein 8 (... [more]
RGPD6_HUMAN5.695e-1144.93RANBP2-like and GRIP domain-containing protein 6 O... [more]
RGPD5_HUMAN5.695e-1144.93RANBP2-like and GRIP domain-containing protein 5 O... [more]
RGPD2_HUMAN5.695e-1144.93RANBP2-like and GRIP domain-containing protein 2 O... [more]
RGPD1_HUMAN5.695e-1144.93RANBP2-like and GRIP domain-containing protein 1 O... [more]

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Properties
Property NameValue
Genbank descriptionC03009B04SK OF2 Citrus clementina cDNA clone C03009B04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291476 ID=CX291476; Name=CX291476; organism=Citrus clementina; type=EST; length=212bp
ACCGTTTTGATAAGGACGGGAATCAGTGGAAAGAGAGAGGCGCCGGTACT
GTTAAGTTGTTGAAACATAAAGTGACCGACAAAGCTCGCCTCGTGATGAG
GCAATCTAAGACTCTCAAGATCTGAGCCAATCATCTCGTATTGCCGATGA
TGTCCGTGCAAGAGCATGCTGGAAATGATAAGTCGCCCGTGCCAACAGCT
GCTGACTATGAT
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