CX291484

Overview
NameCX291484
Unique NameCX291484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_SALTI (UDP-glucose 4-epimerase OS=Salmonella typhi GN=galE PE=3 SV=2)

HSP 1 Score: 85.5001 bits (210), Expect = 9.183e-17
Identity = 43/77 (55.84%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKLWCEEI 229
            LKAV ESV  P  Y+DNN+ GT+ L  AM   N K L+FSSSAT+YG   KIP VE FP G   +PYG++KL  E+I
Sbjct:   83 LKAVGESVAKPLEYYDNNVNGTLRLVSAMRAANVKNLIFSSSATVYGDQPKIPYVESFPTGTPQSPYGKSKLMVEQI 159          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: YGRE_SCHPO (Uncharacterized protein C365.14c OS=Schizosaccharomyces pombe GN=SPBC365.14c PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 1.199e-16
Identity = 44/80 (55.00%), Postives = 52/80 (65.00%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK----IPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+ NN+ GTINL + M KYN +  VFSSSAT+YG P +    IP  E  P    +PYGRTKL+ E I
Sbjct:   89 LKAVGESVQVPLSYYKNNISGTINLIECMKKYNVRDFVFSSSATVYGDPTRPGGTIPIPESCPREGTSPYGRTKLFIENI 168          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_LACHE (UDP-glucose 4-epimerase OS=Lactobacillus helveticus GN=galE PE=2 SV=1)

HSP 1 Score: 83.1889 bits (204), Expect = 4.558e-16
Identity = 40/73 (54.79%), Postives = 50/73 (68.49%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            V ESV+ P +Y+DNN+ G I+L QAM   N K LVFSSSA  YG P+K+P  ED P   +NPYG TK+  E+I
Sbjct:   79 VPESVKKPLKYYDNNVTGMISLLQAMNDANVKYLVFSSSAATYGIPKKLPITEDTPLNPINPYGETKMMMEKI 151          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GAL10_YEAST (Bifunctional protein GAL10 OS=Saccharomyces cerevisiae GN=GAL10 PE=1 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 5.952e-16
Identity = 42/80 (52.50%), Postives = 50/80 (62.50%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQ----PEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ES Q P RY+ NN++GT+ L + M +YN  K VFSSSAT+YG     P  IP  E+ P G  NPYG TK   E I
Sbjct:   94 LKAVGESTQIPLRYYHNNILGTVVLLELMQQYNVSKFVFSSSATVYGDATRFPNMIPIPEECPLGPTNPYGHTKYAIENI 173          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_YERPE (UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 7.774e-16
Identity = 41/77 (53.25%), Postives = 53/77 (68.83%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGA-MNPYGRTKLWCEEI 229
            LKAV ESV  P  Y++NN+ GT+ L +AM     K L+FSSSAT+YG   +IP VE FP G+  +PYGR+KL  E+I
Sbjct:   83 LKAVGESVNRPLEYYNNNVFGTLVLLEAMRAAQVKNLIFSSSATVYGDQPQIPYVESFPTGSPSSPYGRSKLMVEQI 159          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GAL10_KLULA (Bifunctional protein GAL10 OS=Kluyveromyces lactis GN=GAL10 PE=2 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 7.774e-16
Identity = 42/80 (52.50%), Postives = 53/80 (66.25%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK----IPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ES Q P  Y+ NN++GTINL + M  ++ KKLVFSSSAT+YG   +    IP  E  P G  NPYG+TKL  E++
Sbjct:   87 LKAVGESTQIPLTYYFNNIVGTINLLECMKSHDVKKLVFSSSATVYGDATRFENMIPIPETCPTGPTNPYGKTKLTIEDM 166          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_YEREN (UDP-glucose 4-epimerase OS=Yersinia enterocolitica GN=galE PE=3 SV=1)

HSP 1 Score: 79.7221 bits (195), Expect = 5.039e-15
Identity = 38/77 (49.35%), Postives = 52/77 (67.53%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LK+V ESV+ P  Y+ NN++G+I L + M   N KKL+FSSSAT+YG+PE +P  E     G  NPYG +K+  E+I
Sbjct:   83 LKSVGESVEKPIEYYQNNVVGSITLLEEMCLANVKKLIFSSSATVYGEPEFVPLTEKARIGGTTNPYGTSKVMVEQI 159          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_PONAB (UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.501e-14
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+  NL GTI L + M  +  K LVFSSSAT+YG P+ +P  E  P  G  NPYG++K + EE+
Sbjct:   91 LKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEM 167          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_MOUSE (UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE=2 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.501e-14
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+  NL GTI L + M  +  K LVFSSSAT+YG P+ +P  E  P  G  NPYG++K + EE+
Sbjct:   90 LKAVGESVQKPLDYYRVNLTGTIQLLEIMRAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEM 166          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_HUMAN (UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE=1 SV=2)

HSP 1 Score: 77.411 bits (189), Expect = 2.501e-14
Identity = 40/77 (51.95%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+  NL GTI L + M  +  K LVFSSSAT+YG P+ +P  E  P  G  NPYG++K + EE+
Sbjct:   91 LKAVGESVQKPLDYYRVNLTGTIQLLEIMKAHGVKNLVFSSSATVYGNPQYLPLDEAHPTGGCTNPYGKSKFFIEEM 167          
The following BLAST results are available for this feature:
BLAST of CX291484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GALE_SALTI9.183e-1755.84UDP-glucose 4-epimerase OS=Salmonella typhi GN=gal... [more]
YGRE_SCHPO1.199e-1655.00Uncharacterized protein C365.14c OS=Schizosaccharo... [more]
GALE_LACHE4.558e-1654.79UDP-glucose 4-epimerase OS=Lactobacillus helveticu... [more]
GAL10_YEAST5.952e-1652.50Bifunctional protein GAL10 OS=Saccharomyces cerevi... [more]
GALE_YERPE7.774e-1653.25UDP-glucose 4-epimerase OS=Yersinia pestis GN=galE... [more]
GAL10_KLULA7.774e-1652.50Bifunctional protein GAL10 OS=Kluyveromyces lactis... [more]
GALE_YEREN5.039e-1549.35UDP-glucose 4-epimerase OS=Yersinia enterocolitica... [more]
GALE_PONAB2.501e-1451.95UDP-glucose 4-epimerase OS=Pongo abelii GN=GALE PE... [more]
GALE_MOUSE2.501e-1451.95UDP-glucose 4-epimerase OS=Mus musculus GN=Gale PE... [more]
GALE_HUMAN2.501e-1451.95UDP-glucose 4-epimerase OS=Homo sapiens GN=GALE PE... [more]

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Properties
Property NameValue
Genbank descriptionC03009D04SK OF2 Citrus clementina cDNA clone C03009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291484 ID=CX291484; Name=CX291484; organism=Citrus clementina; type=EST; length=235bp
CCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGATA
ATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATAAC
TGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCTGA
AAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTATG
GACGAACTAAGCTATGGTGCGAAGAAATTGCTTTT
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