CX291484

Overview
NameCX291484
Unique NameCX291484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_DROME (Probable UDP-glucose 4-epimerase OS=Drosophila melanogaster GN=CG12030 PE=1 SV=1)

HSP 1 Score: 77.411 bits (189), Expect = 2.501e-14
Identity = 39/77 (50.65%), Postives = 53/77 (68.83%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYG-AMNPYGRTKLWCEEI 229
            LKAV ES + P +Y+ NN+ GT  L +AMA  N  K V+SSSAT+YG+P+ +P  E+ P G   +PYG+TK + EEI
Sbjct:   92 LKAVGESCRIPLQYYHNNMTGTNVLLEAMADNNVFKFVYSSSATVYGEPKFLPVTEEHPTGNCTSPYGKTKYFTEEI 168          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_NEIMA (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup A GN=galE PE=3 SV=1)

HSP 1 Score: 76.6406 bits (187), Expect = 4.266e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYG-AMNPYGRTKLWCEEI 229
            LKAV ESV  P +Y+DNN+ G++ L + MA+     +VFSSSAT+YG P K+P  ED P G   +PYG +K   E I
Sbjct:   84 LKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPLGDTTSPYGTSKSMVERI 160          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_NEIMB (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup B GN=galE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.276e-14
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYG-AMNPYGRTKLWCEEI 229
            LKAV ESV  P +Y+DNN+ G++ L + MA+     +VFSSSAT+YG P K+P  ED P G   +PYG +K   E I
Sbjct:   84 LKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFSIVFSSSATVYGDPGKVPYTEDMPPGDTTSPYGASKSMVERI 160          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_BACHD (UDP-glucose 4-epimerase OS=Bacillus halodurans GN=galE PE=3 SV=1)

HSP 1 Score: 75.8702 bits (185), Expect = 7.276e-14
Identity = 37/79 (46.84%), Postives = 50/79 (63.29%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKL-------WCEE 226
            V ESV+ P  Y++NN+IGT  L + M +++ KK+VFSS+A  YG+P +IP  E  P    NPYG TKL       WC+E
Sbjct:   78 VGESVKQPIEYYENNVIGTHTLLKKMLEHDVKKIVFSSTAATYGEPVQIPIQESDPTIPTNPYGETKLAIEKMFHWCQE 156          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_NEIMC (UDP-glucose 4-epimerase OS=Neisseria meningitidis serogroup C GN=galE PE=3 SV=1)

HSP 1 Score: 75.0998 bits (183), Expect = 1.241e-13
Identity = 38/77 (49.35%), Postives = 50/77 (64.94%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDF-PYGAMNPYGRTKLWCEEI 229
            LKAV ESV  P +Y+DNN+ G++ L + MA+    K+VFSSSAT+YG P K+P  ED  P    +PYG +K   E I
Sbjct:   84 LKAVGESVAEPMKYYDNNVSGSLVLAEEMARAGVFKIVFSSSATVYGDPGKVPYTEDMQPGDTTSPYGTSKSMVERI 160          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_STRMU (UDP-glucose 4-epimerase OS=Streptococcus mutans GN=galE PE=3 SV=2)

HSP 1 Score: 74.7146 bits (182), Expect = 1.621e-13
Identity = 35/73 (47.95%), Postives = 48/73 (65.75%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            VAES++ P +YFDNN  G I L + M+++  K +VFSS+A  YG P++IP  E  P   +NPYG +KL  E I
Sbjct:   81 VAESMKKPLKYFDNNTAGMIKLLEVMSEFGVKYIVFSSTAATYGIPDEIPIKETTPQRPINPYGESKLMMETI 153          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_LACCA (UDP-glucose 4-epimerase OS=Lactobacillus casei GN=galE PE=3 SV=1)

HSP 1 Score: 74.3294 bits (181), Expect = 2.117e-13
Identity = 35/73 (47.95%), Postives = 49/73 (67.12%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            V ES++ P +YFDNN  G I L +AM ++  KK+VFSS+A  YG+P+++P  E  P    NPYG +KL  E+I
Sbjct:   79 VPESMKDPLKYFDNNTGGMITLLEAMNQFGIKKIVFSSTAATYGEPKQVPIKETDPQVPTNPYGESKLAMEKI 151          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_HAEIN (UDP-glucose 4-epimerase OS=Haemophilus influenzae GN=galE PE=3 SV=2)

HSP 1 Score: 73.559 bits (179), Expect = 3.611e-13
Identity = 40/77 (51.95%), Postives = 47/77 (61.04%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+ NN+ GT+ L Q M K      VFSSSAT+YG P+ IP  ED    G  NPYG +K   E+I
Sbjct:   83 LKAVGESVQKPTEYYMNNVAGTLVLIQEMKKAGVWNFVFSSSATVYGDPKIIPITEDCEVGGTTNPYGTSKYMVEQI 159          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_STRTR (UDP-glucose 4-epimerase OS=Streptococcus thermophilus GN=galE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.716e-13
Identity = 34/73 (46.58%), Postives = 46/73 (63.01%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            V ES++ P +YFDNN  G + L + M +   K +VFSS+A  YG PE+IP +E  P   +NPYG +KL  E I
Sbjct:   81 VGESMEKPLKYFDNNTAGMVKLLEVMNECGVKYIVFSSTAATYGIPEEIPILETTPQNPINPYGESKLMMETI 153          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_NEIGO (UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae GN=galE PE=3 SV=1)

HSP 1 Score: 73.1738 bits (178), Expect = 4.716e-13
Identity = 37/77 (48.05%), Postives = 49/77 (63.64%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDF-PYGAMNPYGRTKLWCEEI 229
            LKAV ESV  P +Y+ NN+ G++ L + MA+    K+VFSSSAT+YG  EK+P  ED  P    NPYG +K   E +
Sbjct:   83 LKAVGESVAEPTKYYGNNVYGSLVLAEEMARAGVLKIVFSSSATVYGDAEKVPYTEDMRPGDTANPYGASKAMVERM 159          
The following BLAST results are available for this feature:
BLAST of CX291484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GALE_DROME2.501e-1450.65Probable UDP-glucose 4-epimerase OS=Drosophila mel... [more]
GALE_NEIMA4.266e-1449.35UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_NEIMB7.276e-1449.35UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_BACHD7.276e-1446.84UDP-glucose 4-epimerase OS=Bacillus halodurans GN=... [more]
GALE_NEIMC1.241e-1349.35UDP-glucose 4-epimerase OS=Neisseria meningitidis ... [more]
GALE_STRMU1.621e-1347.95UDP-glucose 4-epimerase OS=Streptococcus mutans GN... [more]
GALE_LACCA2.117e-1347.95UDP-glucose 4-epimerase OS=Lactobacillus casei GN=... [more]
GALE_HAEIN3.611e-1351.95UDP-glucose 4-epimerase OS=Haemophilus influenzae ... [more]
GALE_STRTR4.716e-1346.58UDP-glucose 4-epimerase OS=Streptococcus thermophi... [more]
GALE_NEIGO4.716e-1348.05UDP-glucose 4-epimerase OS=Neisseria gonorrhoeae G... [more]

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Properties
Property NameValue
Genbank descriptionC03009D04SK OF2 Citrus clementina cDNA clone C03009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291484 ID=CX291484; Name=CX291484; organism=Citrus clementina; type=EST; length=235bp
CCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGATA
ATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATAAC
TGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCTGA
AAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTATG
GACGAACTAAGCTATGGTGCGAAGAAATTGCTTTT
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