CX291484

Overview
NameCX291484
Unique NameCX291484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GAL10_SCHPO (Bifunctional protein gal10 OS=Schizosaccharomyces pombe GN=gal10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.160e-13
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK----IPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ES++ P  Y+DNN+ GTI L   M ++  K +VFSSSAT+YG   +    IP  E  P    NPYG+TK   E I
Sbjct:   88 LKAVGESMKLPLEYYDNNICGTITLLNVMREHRVKTVVFSSSATVYGDATRFDNMIPIPESCPNDPTNPYGKTKYAIENI 167          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GAL10_PACTA (Bifunctional protein GAL10 OS=Pachysolen tannophilus GN=GAL10 PE=2 SV=1)

HSP 1 Score: 72.7886 bits (177), Expect = 6.160e-13
Identity = 38/80 (47.50%), Postives = 48/80 (60.00%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEK----IPCVEDFPYGAMNPYGRTKLWCEEI 229
            LKAV ES + P  Y+ NN+ G I+L + M + N K +VFSSSAT+YG   +    IP  E  P G  NPYG TK+  E I
Sbjct:   84 LKAVGESTKFPLNYYSNNVGGAISLLKVMEENNVKNIVFSSSATVYGDATRFENMIPIPEHCPTGPTNPYGETKITIENI 163          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_PASMU (UDP-glucose 4-epimerase OS=Pasteurella multocida GN=galE PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 1.372e-12
Identity = 39/77 (50.65%), Postives = 46/77 (59.74%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+ NN+ G++ L Q M K      VFSSSAT+YG PE IP  E     G  NPYG +K   E+I
Sbjct:   83 LKAVGESVQKPAEYYMNNVTGSLVLIQEMKKAGVWNFVFSSSATVYGDPEIIPITESCKVGGTTNPYGTSKFMVEQI 159          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: ARAE4_ARATH (Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsis thaliana GN=At5g44480 PE=3 SV=1)

HSP 1 Score: 71.2478 bits (173), Expect = 1.792e-12
Identity = 30/73 (41.10%), Postives = 47/73 (64.38%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            V ES  +P +Y+ N    T+ + +AMA++  KKL++SS+   YG+PEK+P  ED P   +NPYG+ K   E++
Sbjct:  182 VGESTLYPLKYYHNITSNTLGVLEAMARHKVKKLIYSSTCATYGEPEKMPITEDTPQVPINPYGKAKKMAEDM 254          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_STRLI (UDP-glucose 4-epimerase OS=Streptomyces lividans GN=galE PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.057e-12
Identity = 34/68 (50.00%), Postives = 46/68 (67.65%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKL 214
            V ESV  P +Y+DNN+ GT+ L +AM     ++LVFSS+A  YG+PE++P VE  P    NPYG +KL
Sbjct:   82 VGESVVKPEKYWDNNVGGTMALLEAMRGAGVRRLVFSSTAATYGEPEQVPIVESAPTRPTNPYGASKL 149          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_CORDI (UDP-glucose 4-epimerase OS=Corynebacterium diphtheriae GN=galE PE=3 SV=2)

HSP 1 Score: 70.4774 bits (171), Expect = 3.057e-12
Identity = 32/68 (47.06%), Postives = 44/68 (64.71%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKL 214
            V ESV+ P  Y+ +N++ T+ L  AM + N + +VFSS+A  YG+PE +P  ED P    NPYG TKL
Sbjct:   77 VGESVEKPDEYWQHNMVTTLALLDAMKRNNVRNIVFSSTAATYGEPETVPITEDAPTHPTNPYGATKL 144          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: ARAE2_ORYSJ (Probable UDP-arabinose 4-epimerase 2 OS=Oryza sativa subsp. japonica GN=UEL-2 PE=2 SV=1)

HSP 1 Score: 68.1662 bits (165), Expect = 1.517e-11
Identity = 30/73 (41.10%), Postives = 43/73 (58.90%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            V ES   P RY+ N    T+ + +AMA YN K L++SS+   YG+P+ +P  E  P   +NPYG+ K   E+I
Sbjct:  137 VGESTLEPLRYYHNITSNTLTVLEAMAAYNVKTLIYSSTCATYGEPDTMPITEATPQNPINPYGKAKKMAEDI 209          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_PASHA (UDP-glucose 4-epimerase OS=Pasteurella haemolytica GN=galE PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 3.380e-11
Identity = 36/77 (46.75%), Postives = 47/77 (61.04%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LKAV E+ ++ +    NN+ G+I L + M K N   +VFSSSAT+YG P+ IP VE  P  G  NPYG +K   E I
Sbjct:   83 LKAVGETSENRYVTIKNNVTGSIVLVEEMLKANVNTIVFSSSATVYGDPQIIPIVESCPVGGTTNPYGTSKYMVERI 159          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_RAT (UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Gale PE=2 SV=1)

HSP 1 Score: 66.6254 bits (161), Expect = 4.414e-11
Identity = 38/78 (48.72%), Postives = 47/78 (60.26%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFP--YGAMNPYGRTKLWCEEI 229
            LKAV ESVQ P  Y+  NL GTI L + M     K LVFSSSAT+YG+P  +P     P   G   PYG++K + EE+
Sbjct:   91 LKAVGESVQKPLDYYRVNLTGTIQLLEIMRAMGVKSLVFSSSATVYGKP--VPASGRGPPHRGCTKPYGKSKFFIEEM 166          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: ARAE1_ORYSJ (Probable UDP-arabinose 4-epimerase 1 OS=Oryza sativa subsp. japonica GN=UEL-1 PE=2 SV=2)

HSP 1 Score: 66.6254 bits (161), Expect = 4.414e-11
Identity = 30/73 (41.10%), Postives = 44/73 (60.27%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            V ES   P RY+ N    T+ + +AMA +N + L++SS+   YG+PEK+P  E  P   +NPYG+ K   E+I
Sbjct:  160 VGESTLEPLRYYHNITSNTLVVLEAMAAHNVRTLIYSSTCATYGEPEKMPITEGTPQFPINPYGKAKKMAEDI 232          
The following BLAST results are available for this feature:
BLAST of CX291484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
GAL10_SCHPO6.160e-1347.50Bifunctional protein gal10 OS=Schizosaccharomyces ... [more]
GAL10_PACTA6.160e-1347.50Bifunctional protein GAL10 OS=Pachysolen tannophil... [more]
GALE_PASMU1.372e-1250.65UDP-glucose 4-epimerase OS=Pasteurella multocida G... [more]
ARAE4_ARATH1.792e-1241.10Putative UDP-arabinose 4-epimerase 4 OS=Arabidopsi... [more]
GALE_STRLI3.057e-1250.00UDP-glucose 4-epimerase OS=Streptomyces lividans G... [more]
GALE_CORDI3.057e-1247.06UDP-glucose 4-epimerase OS=Corynebacterium diphthe... [more]
ARAE2_ORYSJ1.517e-1141.10Probable UDP-arabinose 4-epimerase 2 OS=Oryza sati... [more]
GALE_PASHA3.380e-1146.75UDP-glucose 4-epimerase OS=Pasteurella haemolytica... [more]
GALE_RAT4.414e-1148.72UDP-glucose 4-epimerase OS=Rattus norvegicus GN=Ga... [more]
ARAE1_ORYSJ4.414e-1141.10Probable UDP-arabinose 4-epimerase 1 OS=Oryza sati... [more]

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Properties
Property NameValue
Genbank descriptionC03009D04SK OF2 Citrus clementina cDNA clone C03009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291484 ID=CX291484; Name=CX291484; organism=Citrus clementina; type=EST; length=235bp
CCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGATA
ATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATAAC
TGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCTGA
AAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTATG
GACGAACTAAGCTATGGTGCGAAGAAATTGCTTTT
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