CX291484

Overview
NameCX291484
Unique NameCX291484
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length235
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: EXOB_RHIME (UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=exoB PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 5.765e-11
Identity = 31/72 (43.06%), Postives = 41/72 (56.94%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEE 226
            V ESV+ P  ++DNN+IGT+ L  A         VFSS+   YG P+ +P  E      +NPYGRTK  CE+
Sbjct:   81 VGESVKDPAAFYDNNVIGTLTLLSAALAAGIDAFVFSSTCATYGLPDSVPMDESHKQAPINPYGRTKWICEQ 152          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: ARAE2_ARATH (Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsis thaliana GN=At2g34850 PE=2 SV=3)

HSP 1 Score: 66.2402 bits (160), Expect = 5.765e-11
Identity = 29/73 (39.73%), Postives = 44/73 (60.27%), Query Frame = 2
Query:   11 VAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPYGAMNPYGRTKLWCEEI 229
            V ES Q P +Y+ N    T+ + + MA +  K L++SS+   YG+PEK+P  E+ P   +NPYG+ K   E+I
Sbjct:  157 VGESTQFPLKYYHNITSNTLVVLETMAAHGVKTLIYSSTCATYGEPEKMPITEETPQVPINPYGKAKKMAEDI 229          
BLAST of CX291484 vs. ExPASy Swiss-Prot
Match: GALE_ERWAM (UDP-glucose 4-epimerase OS=Erwinia amylovora GN=galE PE=3 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.530e-11
Identity = 33/77 (42.86%), Postives = 45/77 (58.44%), Query Frame = 2
Query:    2 LKAVAESVQHPFRYFDNNLIGTINLYQAMAKYNCKKLVFSSSATIYGQPEKIPCVEDFPY-GAMNPYGRTKLWCEEI 229
            LKAV  S + P  Y+ NN+ GT+ L + M      + +FSSSAT+YG    +P VE  P  G  +PYG +KL  E+I
Sbjct:   83 LKAVGASTRKPLEYYQNNVTGTLVLLEEMRSAGVNQFIFSSSATVYGADAPVPYVETTPIGGTTSPYGTSKLMVEQI 159          
The following BLAST results are available for this feature:
BLAST of CX291484 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
EXOB_RHIME5.765e-1143.06UDP-glucose 4-epimerase OS=Rhizobium meliloti GN=e... [more]
ARAE2_ARATH5.765e-1139.73Putative UDP-arabinose 4-epimerase 2 OS=Arabidopsi... [more]
GALE_ERWAM7.530e-1142.86UDP-glucose 4-epimerase OS=Erwinia amylovora GN=ga... [more]

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Properties
Property NameValue
Genbank descriptionC03009D04SK OF2 Citrus clementina cDNA clone C03009D04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291484 ID=CX291484; Name=CX291484; organism=Citrus clementina; type=EST; length=235bp
CCTTAAGGCTGTGGCAGAGAGTGTTCAACATCCTTTCCGTTATTTTGATA
ATAATTTGATTGGTACCATCAATCTGTATCAGGCCATGGCAAAATATAAC
TGTAAGAAGTTGGTATTTTCATCATCCGCAACTATCTATGGACAGCCTGA
AAAAATACCTTGTGTTGAGGACTTCCCGTATGGTGCTATGAATCCTTATG
GACGAACTAAGCTATGGTGCGAAGAAATTGCTTTT
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