CX291485

Overview
NameCX291485
Unique NameCX291485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PSE14 (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. phaseolicola (strain 1448A / Race 6) GN=ppc PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 56/123 (45.53%), Postives = 78/123 (63.41%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDD--NHKLRDALLITVNGIAAGMRNTG 365
            PFF++ ID++EMVL KAD+ IA+ YDE LVS   Q LGA LR  L      VL ++G ++L  ++      I  R  YL+P+++LQ E+L R R  +   +  L  ALL++V GIAAG+RNTG
Sbjct:  756 PFFRTRIDMLEMVLAKADSDIARLYDERLVSAELQHLGAHLRDLLSQACNVVLGLTGQKQLLAHSPETLEFISLRNTYLDPLHLLQAELLSRSRSREASLDSPLELALLVSVAGIAAGLRNTG 878          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_LACDA (Phosphoenolpyruvate carboxylase OS=Lactobacillus delbrueckii subsp. bulgaricus (strain ATCC 11842 / DSM 20081) GN=ppc PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.327e-19
Identity = 45/121 (37.19%), Postives = 80/121 (66.12%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF S +  ++MVL K++  IA++Y ++   E+ + +   +++E   T++ +L + GH KL E+N SL R ++ RLPY N +N +Q+E++KR RQ+  +      + IT+NG+A+G+RN+G
Sbjct:  789 PFFHSLLSNVDMVLSKSNMEIAEKYADLCEDEATRSVFDIIKKEWELTKEVILQIEGHSKLLEDNPSLERSLDYRLPYFNVLNYVQLEMIKRGRQEKLSGIYESIIHITINGVASGLRNSG 909          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PSEU2 (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=ppc PE=3 SV=1)

HSP 1 Score: 94.3597 bits (233), Expect = 5.183e-19
Identity = 56/123 (45.53%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDD--NHKLRDALLITVNGIAAGMRNTG 365
            PFF++ ID++EMVL KAD  IA+ YDE LVS   Q LGA LR  L      VL ++G  +L  ++      I  R  YL+P+++LQ E+L R R  +   +  L  ALL++V GIAAG+RNTG
Sbjct:  756 PFFRTRIDMLEMVLAKADADIARLYDERLVSAELQHLGAHLRDLLSQACNVVLGLTGQTQLLAHSPETLEFISLRNTYLDPLHLLQAELLSRSRNREASLDSPLELALLVSVAGIAAGLRNTG 878          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PASMU (Phosphoenolpyruvate carboxylase OS=Pasteurella multocida GN=ppc PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 51/123 (41.46%), Postives = 77/123 (62.60%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHK--LRDALLITVNGIAAGMRNTG 365
            PFF + I ++EMV  K DT +++ YD+ LV  +   LG  LR +L    + VL +S  ++L  +   +   I  R  Y +P+N+LQVE+L+RLR++ DN    +  AL+IT+ G+AAGMRNTG
Sbjct:  757 PFFSTRIGMLEMVFSKTDTWLSEHYDQHLVDPALWYLGESLREQLKQDIQTVLSLSHEDQLMSDLPWIAESIALRNVYTDPLNLLQVELLRRLRRNPDNPNPDVEQALMITITGVAAGMRNTG 879          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_BURVG (Phosphoenolpyruvate carboxylase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=ppc PE=3 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 49/122 (40.16%), Postives = 75/122 (61.48%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + +  ++MVL K D  +A RY +++     R+ +   +  E   T + +  ++GHE     N  L R I++R PYL+P+N LQVE++KR R  D N +LR  + +T+NGIAAG+RNTG
Sbjct:  876 PFFANLLSNMDMVLAKTDLAVASRYAQLVADRKLRKHVFERIVAEWERTAQALAEITGHEGRLATNPLLARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 997          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP1_MESCR (Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthemum crystallinum GN=PPCA PE=2 SV=1)

HSP 1 Score: 93.5893 bits (231), Expect = 8.841e-19
Identity = 56/152 (36.84%), Postives = 79/152 (51.97%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDD--------------DNHK-----------------LRDALLITVNGIAAGMRNTG 365
            PFF+ TIDL+EMV  K D  IA  YD++LVSE  Q  G  LR     T++ +L V+GH+ L E +  L++ +  R PY+  +N+ Q   LKR+R  D              D HK                 L D L++T+ G+AAG++NTG
Sbjct:  815 PFFRVTIDLLEMVFAKGDPEIAALYDKLLVSEELQSFGERLRANYEDTKRRLLEVAGHKDLLEGDPYLKQRLRLRDPYITTLNVCQAYTLKRIRDPDFKVTERPHLSKEIMDAHKAAAELVKLNPTSEYAPGLEDTLILTMKGVAAGLQNTG 966          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PSESM (Phosphoenolpyruvate carboxylase OS=Pseudomonas syringae pv. tomato GN=ppc PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.155e-18
Identity = 55/123 (44.72%), Postives = 76/123 (61.79%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDD--NHKLRDALLITVNGIAAGMRNTG 365
            PFF++ ID++EMVL KAD  IA+ YDE LV+   Q LGA LR  L      VL ++G  +L  ++      I  R  YL+P+++LQ E+L R R  +   +  L  ALL++V GIAAG+RNTG
Sbjct:  756 PFFRTRIDMLEMVLAKADADIARLYDERLVTAELQHLGAHLRDLLSQACNVVLGLTGQTQLLAHSPETLEFISLRNAYLDPLHLLQAELLSRSRNREASLDSPLELALLVSVAGIAAGLRNTG 878          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_STRMU (Phosphoenolpyruvate carboxylase OS=Streptococcus mutans GN=ppc PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF S +  ++MVL K++ +IA  Y ++   E  +E+ A +  E   T+  +L +  H++L E+N  L+  ++ RLPY N +N +Q+E++KR R+ +    L + + IT+NG+A G+RN+G
Sbjct:  787 PFFHSLLSNVDMVLSKSNMNIAFEYAKLCQDEETKEVFATILDEWQLTKNVILAIESHKQLLEDNSYLKASLDYRLPYFNVLNYIQIELIKRQRRGELGENLENLIHITINGVATGLRNSG 907          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_SHESH (Phosphoenolpyruvate carboxylase OS=Shewanella sediminis (strain HAW-EB3) GN=ppc PE=3 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.508e-18
Identity = 50/122 (40.98%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDD-NHKLRDALLITVNGIAAGMRNTG 365
            PFF++ I ++EMV  KA+ ++AK Y+  LV E+   LG  LR  L T  K VL ++    L E+    R  +  R PY++P+N +Q E+L R R++++ +  +  AL+IT+ G+AAGMRNTG
Sbjct:  757 PFFKTRISMLEMVYAKAEPNLAKYYETCLVPENLHHLGEALRTRLATGIKAVLELTQSNALMEHTPWNRESVTLRNPYIDPLNFVQAELLARTRKEEEASTNVELALMITIAGVAAGMRNTG 878          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PROMH (Phosphoenolpyruvate carboxylase OS=Proteus mirabilis (strain HI4320) GN=ppc PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 1.970e-18
Identity = 52/122 (42.62%), Postives = 77/122 (63.11%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR-QDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + I ++EMV  KAD  +A+ YD+ LV E+   LGA+LR++L    K VL +S  E L  +   +   I  R  Y +P+N+LQ E+L+R R   + + ++  AL++T+ GIAAGMRNTG
Sbjct:  757 PFFNTRIAMLEMVYAKADLWLAEYYDQRLVEENLWPLGAKLRQQLSDDIKSVLAISKDEHLMADLPWVAESIALRNVYTDPLNVLQAELLQRSRTHSESDPRIEQALMVTIAGIAAGMRNTG 878          
The following BLAST results are available for this feature:
BLAST of CX291485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
CAPP_PSE142.327e-1945.53Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_LACDA2.327e-1937.19Phosphoenolpyruvate carboxylase OS=Lactobacillus d... [more]
CAPP_PSEU25.183e-1945.53Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_PASMU8.841e-1941.46Phosphoenolpyruvate carboxylase OS=Pasteurella mul... [more]
CAPP_BURVG8.841e-1940.16Phosphoenolpyruvate carboxylase OS=Burkholderia vi... [more]
CAPP1_MESCR8.841e-1936.84Phosphoenolpyruvate carboxylase 1 OS=Mesembryanthe... [more]
CAPP_PSESM1.155e-1844.72Phosphoenolpyruvate carboxylase OS=Pseudomonas syr... [more]
CAPP_STRMU1.508e-1835.54Phosphoenolpyruvate carboxylase OS=Streptococcus m... [more]
CAPP_SHESH1.508e-1840.98Phosphoenolpyruvate carboxylase OS=Shewanella sedi... [more]
CAPP_PROMH1.970e-1842.62Phosphoenolpyruvate carboxylase OS=Proteus mirabil... [more]

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Properties
Property NameValue
Genbank descriptionC03009E02SK OF2 Citrus clementina cDNA clone C03009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291485 ID=CX291485; Name=CX291485; organism=Citrus clementina; type=EST; length=627bp
GGCCCTTTTTCCAGTCTACCATAGATCTCATAGAGATGGTTTTAGGGAAG
GCAGACACTCATATAGCCAAGCGCTATGATGAAGTCCTTGTTTCAGAGAG
TAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGCTCTTAACAACTGAGA
AGTACGTACTTGTGGTTAGTGGGCATGAGAAGCTATCTGAGAATAACCGC
AGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATATCTCAATCCTATGAA
TATGTTGCAGGTGGAGATACTGAAGAGATTGAGACAGGATGATGATAACC
ATAAACTCAGAGATGCATTGCTCATCACTGTAAATGGAATAGCTGCTGGT
ATGAGGAACACAGGTTAAGTCAATTCGCTAGCTGGTTTAACACAGGTTAA
GTTTAAGTGGCTTGTATGCATATCGGGAAGACAGGTTTAGTAAAATCTCG
CTTGTCATCTGCTAATGTATGCCGGAAACTACTCCTATTTCTATTTTTGT
AATTTTCTTTTTAGAACTGCGGCTTGATGGTTGAGGTCACAACTAAATGT
ACTTGACATAGGCTGTGTGGAAAAATTTGTGGAAAATTTTCAGTTAGTAG
TATTTTTGTGAAAAAAAAAAAAAAAAA
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