CX291485

Overview
NameCX291485
Unique NameCX291485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_RALSO (Phosphoenolpyruvate carboxylase OS=Ralstonia solanacearum GN=ppc PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 45/125 (36.00%), Postives = 77/125 (61.60%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQ---DDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + +  ++MVL KAD ++A RY ++      R  + + +  E   TE+ +  ++G  +   +N  L R I++R PYL+P+N LQVE+LKR R      ++ ++R  + +++NGIAAG+RN+G
Sbjct:  861 PFFANLLSNMDMVLSKADLNVASRYAQLCEDRKLRNAVFSRISAEFTLTEQVLGAITGQSERLADNPLLARSIKNRFPYLDPLNHLQVELLKRFRSGKAGSNDARVRRGIHLSINGIAAGLRNSG 985          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_MYCUA (Phosphoenolpyruvate carboxylase OS=Mycobacterium ulcerans (strain Agy99) GN=ppc PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 42/122 (34.43%), Postives = 76/122 (62.30%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF+S +  +  V+ K+D  +A RY E++  E+ R+ +  ++  E   T      ++G + L  +N +L R + +R PYL P+N LQVE+L+R R  +D+  ++  +L+T+NG+A+ +RN+G
Sbjct:  814 PFFRSVLSNMAQVMAKSDLELAARYSELVADETLRRRVFDKIADEHHRTIAMYKRITGQDDLLADNPALARSVFNRFPYLEPLNHLQVELLRRYRSGEDDESVQRGILLTMNGLASALRNSG 935          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_EDWI9 (Phosphoenolpyruvate carboxylase OS=Edwardsiella ictaluri (strain 93-146) GN=ppc PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 47/122 (38.52%), Postives = 74/122 (60.66%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR-QDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + ID++EMV  K+D  +A+ YD+ LV  +   LG ELR+++    + VL ++  + L  +       I  R  Y +P+N+LQ E+L R R Q+  +  +  AL++T+ G+AAGMRNTG
Sbjct:  756 PFFTTRIDMLEMVFAKSDLWLAEYYDQRLVDPALWPLGTELRQQVQRDIQAVLTIADTDHLMADLPWAAESIALRNVYTDPLNVLQAELLYRSRHQEQPDANVEQALMVTIAGVAAGMRNTG 877          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_CITK8 (Phosphoenolpyruvate carboxylase OS=Citrobacter koseri (strain ATCC BAA-895 / CDC 4225-83 / SGSC4696) GN=ppc PE=3 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 3.145e-16
Identity = 48/126 (38.10%), Postives = 73/126 (57.94%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR-----QDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + + ++EMV  KAD  +A+ YD+ LV ++   LG ELR  L    K VL ++    L  +   +   I+ R  Y +P+N+LQ E+L R R       D + ++  AL++T+ G+AAGMRNTG
Sbjct:  758 PFFSTRLGMLEMVFSKADLWLAEYYDQRLVKKALWPLGEELRNLLAEDIKVVLAIANDSHLMADLPWIAESIQLRNVYTDPLNVLQAELLHRSRLAEEQGKDPDPRVEQALMVTIAGVAAGMRNTG 883          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_VEREI (Phosphoenolpyruvate carboxylase OS=Verminephrobacter eiseniae (strain EF01-2) GN=ppc PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 45/123 (36.59%), Postives = 82/123 (66.67%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESR--QELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF++ +  ++MVL K+D  +A RY E LVS++R  +++ A +  E  +T   +  ++G ++   +N +L R I+ R  Y++P++ LQVE+++R R   D+ +++  + I++NGIAAG+RNTG
Sbjct:  809 PFFRTLLSNMDMVLAKSDLALAGRYSE-LVSDARLRKKVFAAIEAEWHSTADALSRITGDQQRLAHNSALARSIKHRFAYIDPLHHLQVELVRRWRAGQDDERVQTGIHISINGIAAGLRNTG 930          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_RHOPB (Phosphoenolpyruvate carboxylase OS=Rhodopseudomonas palustris (strain BisB18) GN=ppc PE=3 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 45/122 (36.89%), Postives = 76/122 (62.30%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF++ +  ++MVL K+   IA RY E++  E  RQ +   +R E   + + +L +   ++L ++N  L R I +R PYL+P+N +QVE+LK  R    + K+   + +T+NGI+AG+RN+G
Sbjct:  808 PFFRTLLSNMDMVLAKSSIAIASRYAELVPDEQLRQAIFGRIRAEWHGSIQALLDIMQQDRLLQSNPRLERSIRNRFPYLDPLNHVQVELLKEHRSHAIDEKVLRGIQLTINGISAGLRNSG 929          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_FLAAU (Phosphoenolpyruvate carboxylase OS=Flaveria australasica PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 53/153 (34.64%), Postives = 77/153 (50.33%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLR--------------------------------DALLITVNGIAAGMRNTG 365
            PFF+ TIDL+EMV  K +  IA   D++LVSE  +  G  LR     T+ Y+L ++GH+ L E +  L++ I  R PY+  +N+ Q   LKR+R  + +  LR                                D L++T+ GIAAGM+NTG
Sbjct:  814 PFFRVTIDLVEMVFAKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRLRDPYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 966          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP2_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia PE=2 SV=2)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 53/153 (34.64%), Postives = 77/153 (50.33%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLR--------------------------------DALLITVNGIAAGMRNTG 365
            PFF+ TIDL+EMV  K +  IA   D++LVSE  +  G  LR     T+ Y+L ++GH+ L E +  L++ I  R PY+  +N+ Q   LKR+R  + +  LR                                D L++T+ GIAAGM+NTG
Sbjct:  814 PFFRVTIDLVEMVFAKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRLRDPYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 966          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP1_FLATR (Phosphoenolpyruvate carboxylase OS=Flaveria trinervia GN=PPCA1 PE=2 SV=1)

HSP 1 Score: 84.7297 bits (208), Expect = 4.107e-16
Identity = 53/153 (34.64%), Postives = 77/153 (50.33%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLR--------------------------------DALLITVNGIAAGMRNTG 365
            PFF+ TIDL+EMV  K +  IA   D++LVSE  +  G  LR     T+ Y+L ++GH+ L E +  L++ I  R PY+  +N+ Q   LKR+R  + +  LR                                D L++T+ GIAAGM+NTG
Sbjct:  815 PFFRVTIDLVEMVFAKGNPGIAALNDKLLVSEDLRPFGESLRANYEETKNYLLKIAGHKDLLEGDPYLKQGIRLRDPYITTLNVCQAYTLKRIRDPNYHVTLRPHISKEYAAEPSKPADELIHLNPTSEYAPGLEDTLILTMKGIAAGMQNTG 967          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_STRTD (Phosphoenolpyruvate carboxylase OS=Streptococcus thermophilus (strain ATCC BAA-491 / LMD-9) GN=ppc PE=3 SV=1)

HSP 1 Score: 84.3445 bits (207), Expect = 5.364e-16
Identity = 43/121 (35.54%), Postives = 72/121 (59.50%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF+S +  ++MVL K+D +IA  Y ++  SE  + +   +  E   T+  +L +  H+   E + SL+  +  RLPY N +N +Q+E++KRLR ++        + IT+NGIA G+RN+G
Sbjct:  820 PFFRSLLSNVDMVLSKSDMNIAFHYAQLAESEEVRSVFNIILDEWQLTKNVILAIEKHDDFLEESPSLKASLGFRLPYFNVLNYIQIELIKRLRNNNLTDDEISLIHITINGIATGLRNSG 940          
The following BLAST results are available for this feature:
BLAST of CX291485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
CAPP_RALSO3.145e-1636.00Phosphoenolpyruvate carboxylase OS=Ralstonia solan... [more]
CAPP_MYCUA3.145e-1634.43Phosphoenolpyruvate carboxylase OS=Mycobacterium u... [more]
CAPP_EDWI93.145e-1638.52Phosphoenolpyruvate carboxylase OS=Edwardsiella ic... [more]
CAPP_CITK83.145e-1638.10Phosphoenolpyruvate carboxylase OS=Citrobacter kos... [more]
CAPP_VEREI4.107e-1636.59Phosphoenolpyruvate carboxylase OS=Verminephrobact... [more]
CAPP_RHOPB4.107e-1636.89Phosphoenolpyruvate carboxylase OS=Rhodopseudomona... [more]
CAPP_FLAAU4.107e-1634.64Phosphoenolpyruvate carboxylase OS=Flaveria austra... [more]
CAPP2_FLATR4.107e-1634.64Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP1_FLATR4.107e-1634.64Phosphoenolpyruvate carboxylase OS=Flaveria triner... [more]
CAPP_STRTD5.364e-1635.54Phosphoenolpyruvate carboxylase OS=Streptococcus t... [more]

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Properties
Property NameValue
Genbank descriptionC03009E02SK OF2 Citrus clementina cDNA clone C03009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291485 ID=CX291485; Name=CX291485; organism=Citrus clementina; type=EST; length=627bp
GGCCCTTTTTCCAGTCTACCATAGATCTCATAGAGATGGTTTTAGGGAAG
GCAGACACTCATATAGCCAAGCGCTATGATGAAGTCCTTGTTTCAGAGAG
TAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGCTCTTAACAACTGAGA
AGTACGTACTTGTGGTTAGTGGGCATGAGAAGCTATCTGAGAATAACCGC
AGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATATCTCAATCCTATGAA
TATGTTGCAGGTGGAGATACTGAAGAGATTGAGACAGGATGATGATAACC
ATAAACTCAGAGATGCATTGCTCATCACTGTAAATGGAATAGCTGCTGGT
ATGAGGAACACAGGTTAAGTCAATTCGCTAGCTGGTTTAACACAGGTTAA
GTTTAAGTGGCTTGTATGCATATCGGGAAGACAGGTTTAGTAAAATCTCG
CTTGTCATCTGCTAATGTATGCCGGAAACTACTCCTATTTCTATTTTTGT
AATTTTCTTTTTAGAACTGCGGCTTGATGGTTGAGGTCACAACTAAATGT
ACTTGACATAGGCTGTGTGGAAAAATTTGTGGAAAATTTTCAGTTAGTAG
TATTTTTGTGAAAAAAAAAAAAAAAAA
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