CX291485

Overview
NameCX291485
Unique NameCX291485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_VIBCH (Phosphoenolpyruvate carboxylase OS=Vibrio cholerae GN=ppc PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 52/122 (42.62%), Postives = 74/122 (60.66%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDD-DNHKLRDALLITVNGIAAGMRNTG 365
            PFF + + ++EMV  K    IA  YDE LV  + + LG +LR +L    K VL V  +E L +++   +  I  R  Y+ P+NMLQ E+L R RQ +    +L +AL++T+ GIAAGMRNTG
Sbjct:  755 PFFSTRLGMLEMVYTKCSVSIACHYDERLVEPTLRPLGEKLRAQLQQDIKVVLNVENNENLMQSDPWGQESIRLRNIYIEPLNMLQAELLYRTRQSELPAPELEEALMVTIAGIAAGMRNTG 876          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_STRPG (Phosphoenolpyruvate carboxylase OS=Streptococcus pyogenes serotype M5 (strain Manfredo) GN=ppc PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF S +  ++MVL K++ +IA +Y ++  S+  +++  E+  E   T+  +L +  H+ L E+N SL+  ++SRLPY N +N +Q+E++KR R +  +      +  T+NGIA G+RN+G
Sbjct:  800 PFFHSLLSNVDMVLSKSNMNIAFQYAQLAESQDVRDVFYEILDEWQLTKNVILAIQDHDDLLEDNPSLKHSLKSRLPYFNVLNYIQIELIKRWRNNQLDENDEKLIHTTINGIATGLRNSG 920          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_STRP8 (Phosphoenolpyruvate carboxylase OS=Streptococcus pyogenes serotype M18 GN=ppc PE=3 SV=1)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF S +  ++MVL K++ +IA +Y ++  S+  +++  E+  E   T+  +L +  H+ L E+N SL+  ++SRLPY N +N +Q+E++KR R +  +      +  T+NGIA G+RN+G
Sbjct:  800 PFFHSLLSNVDMVLSKSNMNIAFQYAQLAESQDVRDVFYEILDEWQLTKNVILAIQDHDDLLEDNPSLKHSLKSRLPYFNVLNYIQIELIKRWRNNQLDENDEKLIHTTINGIATGLRNSG 920          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_STRP6 (Phosphoenolpyruvate carboxylase OS=Streptococcus pyogenes serotype M6 GN=ppc PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF S +  ++MVL K++ +IA +Y ++  S+  +++  E+  E   T+  +L +  H+ L E+N SL+  ++SRLPY N +N +Q+E++KR R +  +      +  T+NGIA G+RN+G
Sbjct:  800 PFFHSLLSNVDMVLSKSNMNIAFQYAQLAESQDVRDVFYEILDEWQLTKNVILAIQDHDDLLEDNPSLKHSLKSRLPYFNVLNYIQIELIKRWRNNQLDENDEKLIHTTINGIATGLRNSG 920          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_STRP3 (Phosphoenolpyruvate carboxylase OS=Streptococcus pyogenes serotype M3 GN=ppc PE=3 SV=2)

HSP 1 Score: 90.1225 bits (222), Expect = 9.775e-18
Identity = 43/121 (35.54%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF S +  ++MVL K++ +IA +Y ++  S+  +++  E+  E   T+  +L +  H+ L E+N SL+  ++SRLPY N +N +Q+E++KR R +  +      +  T+NGIA G+RN+G
Sbjct:  800 PFFHSLLSNVDMVLSKSNMNIAFQYAQLAESQDVRDVFYEILDEWQLTKNVILAIQDHDDLLEDNPSLKHSLKSRLPYFNVLNYIQIELIKRWRNNQLDENDEKLIHTTINGIATGLRNSG 920          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_RHOP5 (Phosphoenolpyruvate carboxylase OS=Rhodopseudomonas palustris (strain BisA53) GN=ppc PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 46/122 (37.70%), Postives = 76/122 (62.30%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF++ +  ++MVL K+   IA RY E++  E  R  +   ++RE  ++   +L + GH++L + N  L R I  R PYL+P+N +QVE+LK+ R    + +    + IT+NGI+AG+RN+G
Sbjct:  806 PFFRTLLSNMDMVLSKSSIAIASRYAELVADEKLRAAIFGRIKREWHSSIAALLAIMGHQRLLQGNPRLERSIRHRFPYLDPLNHVQVELLKQHRDHAVDEQALRGIQITINGISAGLRNSG 927          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP3_SORBI (Phosphoenolpyruvate carboxylase 3 OS=Sorghum bicolor PE=1 SV=2)

HSP 1 Score: 89.7373 bits (221), Expect = 1.277e-17
Identity = 52/150 (34.67%), Postives = 81/150 (54.00%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDD--------------DNHK---------------LRDALLITVNGIAAGMRNTG 365
            PFF+ T+DL+EMV  K D  IA  YDE+LV+E  +  G +LR + + T++ +L ++GH+ + E +  L++ +  R PY+  +N+ Q   LKR+R                 D +K               L D L++T+ GIAAGM+NTG
Sbjct:  811 PFFRVTLDLLEMVFAKGDPGIAGLYDELLVAEELKPFGKQLRDKYVETQQLLLQIAGHKDILEGDPYLKQGLRLRNPYITTLNVFQAYTLKRIRDPSFKVTPQPPLSKEFADENKPAGLVKLNGERVPPGLEDTLILTMKGIAAGMQNTG 960          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_VIBFM (Phosphoenolpyruvate carboxylase OS=Vibrio fischeri (strain MJ11) GN=ppc PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 50/122 (40.98%), Postives = 76/122 (62.30%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDD-NHKLRDALLITVNGIAAGMRNTG 365
            PFF + + ++EMV  K +  +++ YD+ L  +S   LG  LR +L T  K VL V  ++ L E +      I  R  Y++P+NMLQ E+L R RQ ++ + +L +AL++T+ GIAAGMRNTG
Sbjct:  755 PFFSTRLGMLEMVYTKCNPQMSEYYDQRLTDKSLWPLGERLRNQLQTDIKAVLNVENNDHLMERDPWGSESIRLRNIYVDPLNMLQAELLFRTRQQEETSPELEEALMVTIAGIAAGMRNTG 876          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_PSEF5 (Phosphoenolpyruvate carboxylase OS=Pseudomonas fluorescens (strain Pf-5 / ATCC BAA-477) GN=ppc PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 53/123 (43.09%), Postives = 72/123 (58.54%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR--QDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF++ ID++EMVL KAD  IA+ YDE LV      LG  LR  L      VL ++G  +L  ++      I  R  YL+P+++LQ E+L R R  Q      +  ALL++V GIAAG+RNTG
Sbjct:  754 PFFRTRIDMLEMVLAKADADIARSYDERLVEAELLPLGEHLRDLLSQACAVVLGLTGQSQLLAHSPDTLEFIRLRNTYLDPLHLLQAELLARSRKQQAPQGSPVEQALLVSVAGIAAGLRNTG 876          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_HAEIN (Phosphoenolpyruvate carboxylase OS=Haemophilus influenzae GN=ppc PE=3 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 1.667e-17
Identity = 50/123 (40.65%), Postives = 77/123 (62.60%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDD--NHKLRDALLITVNGIAAGMRNTG 365
            PFF + I ++EMV  K+DT ++++YD+ LV +    LG  LR++L    + VL +S   +L  +   +   I  R  Y +P+N+LQVE+L R R++ +  N  +  AL+IT+ GIAAGMRNTG
Sbjct:  757 PFFSTRIGMLEMVFSKSDTWLSQQYDQRLVKKELWYLGENLRKQLEDDIQTVLSLSHQSELMSDLPWIADSIALRNIYTDPLNLLQVELLHRFRENPEQVNPDVEQALMITITGIAAGMRNTG 879          
The following BLAST results are available for this feature:
BLAST of CX291485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
CAPP_VIBCH9.775e-1842.62Phosphoenolpyruvate carboxylase OS=Vibrio cholerae... [more]
CAPP_STRPG9.775e-1835.54Phosphoenolpyruvate carboxylase OS=Streptococcus p... [more]
CAPP_STRP89.775e-1835.54Phosphoenolpyruvate carboxylase OS=Streptococcus p... [more]
CAPP_STRP69.775e-1835.54Phosphoenolpyruvate carboxylase OS=Streptococcus p... [more]
CAPP_STRP39.775e-1835.54Phosphoenolpyruvate carboxylase OS=Streptococcus p... [more]
CAPP_RHOP51.277e-1737.70Phosphoenolpyruvate carboxylase OS=Rhodopseudomona... [more]
CAPP3_SORBI1.277e-1734.67Phosphoenolpyruvate carboxylase 3 OS=Sorghum bicol... [more]
CAPP_VIBFM1.667e-1740.98Phosphoenolpyruvate carboxylase OS=Vibrio fischeri... [more]
CAPP_PSEF51.667e-1743.09Phosphoenolpyruvate carboxylase OS=Pseudomonas flu... [more]
CAPP_HAEIN1.667e-1740.65Phosphoenolpyruvate carboxylase OS=Haemophilus inf... [more]

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Properties
Property NameValue
Genbank descriptionC03009E02SK OF2 Citrus clementina cDNA clone C03009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291485 ID=CX291485; Name=CX291485; organism=Citrus clementina; type=EST; length=627bp
GGCCCTTTTTCCAGTCTACCATAGATCTCATAGAGATGGTTTTAGGGAAG
GCAGACACTCATATAGCCAAGCGCTATGATGAAGTCCTTGTTTCAGAGAG
TAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGCTCTTAACAACTGAGA
AGTACGTACTTGTGGTTAGTGGGCATGAGAAGCTATCTGAGAATAACCGC
AGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATATCTCAATCCTATGAA
TATGTTGCAGGTGGAGATACTGAAGAGATTGAGACAGGATGATGATAACC
ATAAACTCAGAGATGCATTGCTCATCACTGTAAATGGAATAGCTGCTGGT
ATGAGGAACACAGGTTAAGTCAATTCGCTAGCTGGTTTAACACAGGTTAA
GTTTAAGTGGCTTGTATGCATATCGGGAAGACAGGTTTAGTAAAATCTCG
CTTGTCATCTGCTAATGTATGCCGGAAACTACTCCTATTTCTATTTTTGT
AATTTTCTTTTTAGAACTGCGGCTTGATGGTTGAGGTCACAACTAAATGT
ACTTGACATAGGCTGTGTGGAAAAATTTGTGGAAAATTTTCAGTTAGTAG
TATTTTTGTGAAAAAAAAAAAAAAAAA
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