CX291485

Overview
NameCX291485
Unique NameCX291485
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length627
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_LACH4 (Phosphoenolpyruvate carboxylase OS=Lactobacillus helveticus (strain DPC 4571) GN=ppc PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 41/121 (33.88%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + +   +MVL K++  IAK+Y E+   E  + +   + +E   T++ +L + GH+ L  +  +L+  + SR+PY N +N +Q+E++KR R+D+     +  + IT+NG+A+G+RN+G
Sbjct:  792 PFFHALLSNADMVLSKSNMEIAKQYAELCQDEKTKSVFDIIYQEWKLTKQIILQIEGHDDLLSDAPNLKNSLASRMPYFNILNYIQLEMIKRDREDEIKGVFQSIIPITINGVASGLRNSG 912          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_AZOSE (Phosphoenolpyruvate carboxylase OS=Azoarcus sp. (strain EbN1) GN=ppc PE=3 SV=2)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 46/121 (38.02%), Postives = 76/121 (62.81%), Query Frame = 3
Query:    6 FFQSTIDLIEMVLGKADTHIAKRYDEVLVSES-RQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            FF + +  ++MVL K D  IA RY  ++   + R  +   +R E   T   +L ++G  +L + N  L+R I +R PYL+P+N +QVE+L+R R+  D+ ++R  + I++NGIAAG+RN+G
Sbjct:  796 FFAALLSNMDMVLAKTDLAIASRYAGLVKDVNLRDAIFERIRNEWHDTVDALLAITGQRELLDGNPLLKRSIRNRFPYLDPLNHVQVELLRRHRETHDDARIRLGIHISINGIAAGLRNSG 916          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_ACIBT (Phosphoenolpyruvate carboxylase OS=Acinetobacter baumannii (strain ATCC 17978 / NCDC KC 755) GN=ppc PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 49/127 (38.58%), Postives = 79/127 (62.20%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVS-ESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR-----QDDDNHKLRDALLITVNGIAAGMRNTG 365
            P+FQ+ ID++EMVL KAD +IA  Y+  L   E  + LG +LR+ L    + +L +    KL  +N  L + ++ R PYL P+++LQ E++KR R     +  ++  +  AL++++ GIAAG+RNTG
Sbjct:  768 PYFQTLIDMLEMVLSKADANIALYYESHLTEDEDLKVLGNQLRQRLKDAVETLLTLKDESKLLSDNEVLDQSMQVRKPYLLPLHLLQAELMKRRRDYLAERQAEHTPVDHALMVSIAGIAAGLRNTG 894          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP2_SORBI (Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicolor PE=3 SV=1)

HSP 1 Score: 87.4261 bits (215), Expect = 6.336e-17
Identity = 54/152 (35.53%), Postives = 78/152 (51.32%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLR-------------------------------DALLITVNGIAAGMRNTG 365
            PFF+ TIDL+EMV  K +  IA  YD++LVSE  + LG +LR     T+K +L V+GH  L E +  L++ +  R  Y+  +N+ Q   LKR+R  D +  LR                               D L++T+ GIAAG++NTG
Sbjct:  809 PFFRVTIDLVEMVFAKGNPGIAALYDKLLVSEELRPLGEKLRANYEETQKLLLQVAGHRDLLEGDPYLKQRLRLRDAYITTLNVCQAYTLKRIRDPDYHVALRPHLSKEIMDPTKAASELVKLNPGSEYAPGLEDTLILTMKGIAAGLQNTG 960          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_TOLAT (Phosphoenolpyruvate carboxylase OS=Tolumonas auensis (strain DSM 9187 / TA4) GN=ppc PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 51/124 (41.13%), Postives = 79/124 (63.71%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVL-VVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLR--QDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + ++++EMV  KAD  +A+ YD  L  E+   LG  LR+EL  +   VL ++    +L ++   ++  I+ R PY +P+N+LQVE+L R R   D+ N ++  AL++T+ GIAAGMRNTG
Sbjct:  754 PFFHTRLEMLEMVFLKADLWLAEYYDLRLAPENLWPLGKRLRQELQDSINVVLQLLPKRGELLDDQPWIKESIKLRNPYTDPLNVLQVELLHRSRATPDEVNPQVDQALMVTIAGIAAGMRNTG 877          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_ERWT9 (Phosphoenolpyruvate carboxylase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=ppc PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 48/126 (38.10%), Postives = 75/126 (59.52%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQD-----DDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + + ++EMV  KAD  +A+ YD+ LV +S   LG +LR +L +  K VL ++    L  +   +   I  R  Y +P+N+LQ E+L R RQ      + + ++  AL++T+ G+AAGMRNTG
Sbjct:  758 PFFSTRLGMLEMVFSKADLWLAEYYDQRLVDKSLWPLGKQLRDQLESDIKAVLTIANDAHLMADQPWIAESIALRNVYTDPLNVLQAELLHRSRQQEKAGGEPDARVEQALMVTIAGVAAGMRNTG 883          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_ERWCT (Phosphoenolpyruvate carboxylase OS=Erwinia carotovora subsp. atroseptica GN=ppc PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 50/122 (40.98%), Postives = 71/122 (58.20%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQELGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQD-DDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + I ++EMV  KAD  +A+ YD+ LV E    LG +LR +L      VL +S  + L  +   +   I  R  Y +P+N+LQ E+L R RQ    +  L  AL++T+ G+AAGMRNTG
Sbjct:  758 PFFSTRIGMLEMVFAKADLWLAEYYDQRLVEEKLWPLGKQLRDQLAADINIVLAISNDDHLMADLPWIAESIALRNVYTDPLNVLQAELLHRSRQQKQPDADLELALMVTIAGVAAGMRNTG 879          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_BURPS (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei GN=ppc PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQE-----LGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + +  ++MVL K D  +A RY +++  +  ++     + AE  R   T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +T+NGIAAG+RNTG
Sbjct:  873 PFFANLLSNMDMVLAKTDLAVASRYAQLVADKKLRKHVFERIVAEWHR---TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_BURP6 (Phosphoenolpyruvate carboxylase OS=Burkholderia pseudomallei (strain 668) GN=ppc PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQE-----LGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + +  ++MVL K D  +A RY +++  +  ++     + AE  R   T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +T+NGIAAG+RNTG
Sbjct:  873 PFFANLLSNMDMVLAKTDLAVASRYAQLVADKKLRKHVFERIVAEWHR---TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
BLAST of CX291485 vs. ExPASy Swiss-Prot
Match: CAPP_BURMS (Phosphoenolpyruvate carboxylase OS=Burkholderia mallei (strain SAVP1) GN=ppc PE=3 SV=1)

HSP 1 Score: 87.0409 bits (214), Expect = 8.275e-17
Identity = 49/126 (38.89%), Postives = 76/126 (60.32%), Query Frame = 3
Query:    3 PFFQSTIDLIEMVLGKADTHIAKRYDEVLVSESRQE-----LGAELRRELLTTEKYVLVVSGHEKLSENNRSLRRLIESRLPYLNPMNMLQVEILKRLRQDDDNHKLRDALLITVNGIAAGMRNTG 365
            PFF + +  ++MVL K D  +A RY +++  +  ++     + AE  R   T +    +   H +L+ N   L R I++R PYL+P+N LQVE++KR R  D N +LR  + +T+NGIAAG+RNTG
Sbjct:  873 PFFANLLSNMDMVLAKTDLAVASRYAQLVADKKLRKHVFERIVAEWHR---TADALAEITGAHARLAANPL-LARSIKNRFPYLDPLNHLQVELIKRHRAGDTNARLRRGIHLTINGIAAGLRNTG 994          
The following BLAST results are available for this feature:
BLAST of CX291485 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 221
Match NameE-valueIdentityDescription
CAPP_LACH46.336e-1733.88Phosphoenolpyruvate carboxylase OS=Lactobacillus h... [more]
CAPP_AZOSE6.336e-1738.02Phosphoenolpyruvate carboxylase OS=Azoarcus sp. (s... [more]
CAPP_ACIBT6.336e-1738.58Phosphoenolpyruvate carboxylase OS=Acinetobacter b... [more]
CAPP2_SORBI6.336e-1735.53Phosphoenolpyruvate carboxylase 2 OS=Sorghum bicol... [more]
CAPP_TOLAT8.275e-1741.13Phosphoenolpyruvate carboxylase OS=Tolumonas auens... [more]
CAPP_ERWT98.275e-1738.10Phosphoenolpyruvate carboxylase OS=Erwinia tasmani... [more]
CAPP_ERWCT8.275e-1740.98Phosphoenolpyruvate carboxylase OS=Erwinia carotov... [more]
CAPP_BURPS8.275e-1738.89Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURP68.275e-1738.89Phosphoenolpyruvate carboxylase OS=Burkholderia ps... [more]
CAPP_BURMS8.275e-1738.89Phosphoenolpyruvate carboxylase OS=Burkholderia ma... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03009E02SK OF2 Citrus clementina cDNA clone C03009E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291485 ID=CX291485; Name=CX291485; organism=Citrus clementina; type=EST; length=627bp
GGCCCTTTTTCCAGTCTACCATAGATCTCATAGAGATGGTTTTAGGGAAG
GCAGACACTCATATAGCCAAGCGCTATGATGAAGTCCTTGTTTCAGAGAG
TAGGCAAGAGCTTGGTGCTGAGCTAAGGAGGGAGCTCTTAACAACTGAGA
AGTACGTACTTGTGGTTAGTGGGCATGAGAAGCTATCTGAGAATAACCGC
AGTTTGAGGAGGCTGATTGAGAGCAGACTCCCATATCTCAATCCTATGAA
TATGTTGCAGGTGGAGATACTGAAGAGATTGAGACAGGATGATGATAACC
ATAAACTCAGAGATGCATTGCTCATCACTGTAAATGGAATAGCTGCTGGT
ATGAGGAACACAGGTTAAGTCAATTCGCTAGCTGGTTTAACACAGGTTAA
GTTTAAGTGGCTTGTATGCATATCGGGAAGACAGGTTTAGTAAAATCTCG
CTTGTCATCTGCTAATGTATGCCGGAAACTACTCCTATTTCTATTTTTGT
AATTTTCTTTTTAGAACTGCGGCTTGATGGTTGAGGTCACAACTAAATGT
ACTTGACATAGGCTGTGTGGAAAAATTTGTGGAAAATTTTCAGTTAGTAG
TATTTTTGTGAAAAAAAAAAAAAAAAA
back to top