CX291493

Overview
NameCX291493
Unique NameCX291493
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length725
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDK_GLOVI (Nucleoside diphosphate kinase OS=Gloeobacter violaceus GN=ndk PE=3 SV=1)

HSP 1 Score: 189.504 bits (480), Expect = 1.553e-47
Identity = 92/149 (61.74%), Postives = 113/149 (75.84%), Query Frame = 3
Query:   69 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 512
            ME+TFI IKPDGVQRGLVGEI+ RFE++GF L GLKLM V    A+KHY +   +PFFG L+ +ITS PVVA++ EG+GVV T R ++G TNP  S  GTIRGD  I  GRNIIHGSDS+ESA++EIALWF P   + WQ++L  W+YE
Sbjct:    1 MERTFIAIKPDGVQRGLVGEILQRFERRGFKLVGLKLMQVSEALAQKHYAEHKERPFFGGLVAFITSSPVVAVVLEGKGVVATARAMMGVTNPLNSPLGTIRGDYGIDIGRNIIHGSDSLESAEREIALWFAPAELLEWQATLGSWVYE 149          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDK_SYNP2 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 / PR-6) GN=ndk PE=3 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.029e-47
Identity = 87/149 (58.39%), Postives = 112/149 (75.17%), Query Frame = 3
Query:   69 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 512
            ME+TF+M+KPDGVQRGLVG++I RFE KGF L GLKL++V R  AE+HY     +PFFGSL+E+I S PVVAM+WEG+G +   R IIGATNP ++ PGTIRGD  +  GRN+IHGSD  ++A  EIALWF +  + NW+ +   W+YE
Sbjct:    1 MERTFVMVKPDGVQRGLVGDVIRRFEAKGFKLVGLKLVSVSRELAEQHYGVHRERPFFGSLVEFIISVPVVAMVWEGKGAIAAARKIIGATNPLEAEPGTIRGDFGVDIGRNLIHGSDGPDTAASEIALWFSESELANWEPATKAWLYE 149          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDKB_PIG (Nucleoside diphosphate kinase B OS=Sus scrofa GN=NME2 PE=2 SV=1)

HSP 1 Score: 189.119 bits (479), Expect = 2.029e-47
Identity = 91/148 (61.49%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   72 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 512
            E+TFI +KPDGVQRGLVGEII RFE+KGF L  LK +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  + ++S    WIYE
Sbjct:    5 ERTFIAVKPDGVQRGLVGEIIKRFEQKGFRLVALKFLQASEELLKQHYIDLKDRPFFPGLVKYMGSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVEYKSCAFDWIYE 152          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDKA2_XENLA (Nucleoside diphosphate kinase A2 OS=Xenopus laevis PE=2 SV=1)

HSP 1 Score: 188.734 bits (478), Expect = 2.649e-47
Identity = 89/148 (60.14%), Postives = 111/148 (75.00%), Query Frame = 3
Query:   72 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 512
            E+TFI IKPDGVQRGL+G+II RFE+KGF L  +K +   +    +HY DL  +PF+  L+EY+ SGPV+AM+WEG  VVKTGR ++G TNPA S PGTIRGDL I  GRNIIHGSDSV+SA KEIALWF D   + ++S  + W+YE
Sbjct:    6 ERTFIAIKPDGVQRGLMGDIIKRFEQKGFRLVAMKFLQASQDLLRQHYIDLKDRPFYPGLVEYMNSGPVLAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDLCIQVGRNIIHGSDSVDSANKEIALWFKDEELVEYKSCAYEWVYE 153          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDK_CARHZ (Nucleoside diphosphate kinase OS=Carboxydothermus hydrogenoformans (strain Z-2901 / DSM 6008) GN=ndk PE=3 SV=1)

HSP 1 Score: 187.963 bits (476), Expect = 4.519e-47
Identity = 91/149 (61.07%), Postives = 114/149 (76.51%), Query Frame = 3
Query:   69 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGP-INWQSSLHPWIYE 512
            ME+TFIM+KPDGVQRGLVGEII RFEK+GF L GLKLM + R  AE HY +   KPFF  L+ +ITSGPVVAM+WEG+ V+ T R ++GATNP ++ PGTIRG   I  GRN+IHGSDS ESA +EIAL+F +   ++++ +L  WIYE
Sbjct:    1 MERTFIMVKPDGVQRGLVGEIISRFEKRGFKLVGLKLMQISRELAETHYGEHKGKPFFEGLLNFITSGPVVAMVWEGKEVIATAREMMGATNPLKAQPGTIRGTYGIDVGRNVIHGSDSPESAAREIALFFKEEELLSYEKTLDTWIYE 149          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDK_GINCI (Nucleoside diphosphate kinase (Fragment) OS=Ginglymostoma cirratum PE=3 SV=1)

HSP 1 Score: 187.578 bits (475), Expect = 5.902e-47
Identity = 90/148 (60.81%), Postives = 112/148 (75.68%), Query Frame = 3
Query:   72 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFP-DGPINWQSSLHPWIYE 512
            E+TFI +KPDGVQR +VGE+I RFE+KGF L  +K +   +   EKHY +LS KPF+  LI+Y++SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSVESA+KEI+LWF  +  + +Q+    WIYE
Sbjct:    4 ERTFIAVKPDGVQRCIVGEVIKRFEQKGFKLVAMKFLQAPKDLLEKHYCELSDKPFYPKLIKYMSSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAKKEISLWFKREELVEYQNCAQDWIYE 151          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDKB_BOVIN (Nucleoside diphosphate kinase B OS=Bos taurus GN=NME2 PE=2 SV=1)

HSP 1 Score: 186.808 bits (473), Expect = 1.007e-46
Identity = 91/148 (61.49%), Postives = 109/148 (73.65%), Query Frame = 3
Query:   72 EQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 512
            E+TFI IKPDGVQRGLVGEII RFE+KGF L  +K +       ++HY DL  +PFF  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI LWF P+  I ++     WIYE
Sbjct:    5 ERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLQASEELLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEINLWFKPEELIEYKPCAFDWIYE 152          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDK_SYNP6 (Nucleoside diphosphate kinase OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=ndk PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.315e-46
Identity = 89/149 (59.73%), Postives = 111/149 (74.50%), Query Frame = 3
Query:   69 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 512
            ME+TFI IKPDGVQRGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDK_SYNE7 (Nucleoside diphosphate kinase OS=Synechococcus elongatus (strain PCC 7942) GN=ndk PE=3 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.315e-46
Identity = 89/149 (59.73%), Postives = 111/149 (74.50%), Query Frame = 3
Query:   69 MEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWFPDGPI-NWQSSLHPWIYE 512
            ME+TFI IKPDGVQRGLVG II RFE+KGF L GLK +   R  AE+HY     +PFF  L+E+ITSGP+VA++ EGEGVV   R +IGATNP  + PGTIRGD  +  GRNIIHGSD++E+AQ+EIALWF    + +W  ++ PW+YE
Sbjct:    1 MERTFIAIKPDGVQRGLVGTIIGRFEQKGFKLVGLKQLKPSRELAEQHYAVHRERPFFNGLVEFITSGPIVAIVLEGEGVVAAARKLIGATNPLTAEPGTIRGDFGVNIGRNIIHGSDAIETAQQEIALWFSPAELSDWTPTIQPWLYE 149          
BLAST of CX291493 vs. ExPASy Swiss-Prot
Match: NDKB_CANFA (Nucleoside diphosphate kinase B OS=Canis familiaris GN=NME2 PE=2 SV=1)

HSP 1 Score: 186.422 bits (472), Expect = 1.315e-46
Identity = 88/152 (57.89%), Postives = 113/152 (74.34%), Query Frame = 3
Query:   60 LKEMEQTFIMIKPDGVQRGLVGEIIIRFEKKGFSLKGLKLMTVDRPFAEKHYEDLSSKPFFGSLIEYITSGPVVAMIWEGEGVVKTGRTIIGATNPAQSAPGTIRGDLAIVTGRNIIHGSDSVESAQKEIALWF-PDGPINWQSSLHPWIYE 512
            +   E+TFI IKPDGVQRGLVG+I+ RFE+KGF L  +K +       ++HY DL  +PF+  L++Y+ SGPVVAM+WEG  VVKTGR ++G TNPA S PGTIRGD  I  GRNIIHGSDSV+SA+KEI+LWF P+  ++++S    WIYE
Sbjct:    1 MAHQERTFIAIKPDGVQRGLVGDIVKRFEQKGFRLVAMKFLRASEDLLKEHYIDLKDRPFYPGLVKYMHSGPVVAMVWEGLNVVKTGRMMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAFDWIYE 152          
The following BLAST results are available for this feature:
BLAST of CX291493 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
NDK_GLOVI1.553e-4761.74Nucleoside diphosphate kinase OS=Gloeobacter viola... [more]
NDK_SYNP22.029e-4758.39Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDKB_PIG2.029e-4761.49Nucleoside diphosphate kinase B OS=Sus scrofa GN=N... [more]
NDKA2_XENLA2.649e-4760.14Nucleoside diphosphate kinase A2 OS=Xenopus laevis... [more]
NDK_CARHZ4.519e-4761.07Nucleoside diphosphate kinase OS=Carboxydothermus ... [more]
NDK_GINCI5.902e-4760.81Nucleoside diphosphate kinase (Fragment) OS=Gingly... [more]
NDKB_BOVIN1.007e-4661.49Nucleoside diphosphate kinase B OS=Bos taurus GN=N... [more]
NDK_SYNP61.315e-4659.73Nucleoside diphosphate kinase OS=Synechococcus sp.... [more]
NDK_SYNE71.315e-4659.73Nucleoside diphosphate kinase OS=Synechococcus elo... [more]
NDKB_CANFA1.315e-4657.89Nucleoside diphosphate kinase B OS=Canis familiari... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03009G04SK OF2 Citrus clementina cDNA clone C03009G04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291493 ID=CX291493; Name=CX291493; organism=Citrus clementina; type=EST; length=725bp
GATTCGGCCGAGGGCTGCGCTATTTCACTCAATTCTCAAACAAGTTGCTT
TCTCTGAATCTCAAAGAAATGGAACAAACTTTCATCATGATCAAGCCCGA
TGGGGTCCAAAGAGGCCTTGTTGGTGAAATCATCATCAGATTTGAGAAGA
AGGGTTTCTCCTTGAAGGGTTTGAAGCTTATGACTGTGGACCGCCCTTTT
GCTGAGAAGCACTATGAGGATTTGTCATCGAAGCCTTTCTTTGGTTCTCT
GATTGAGTACATTACCTCTGGTCCTGTTGTTGCTATGATTTGGGAGGGTG
AAGGTGTTGTTAAGACTGGCCGCACTATTATTGGAGCCACCAACCCTGCG
CAGTCTGCTCCTGGAACCATCCGTGGTGATTTGGCTATCGTGACGGGCAG
GAATATCATCCATGGAAGTGACTCAGTTGAGAGTGCCCAGAAAGAAATCG
CCTTGTGGTTCCCTGATGGCCCTATTAACTGGCAGAGCAGCCTTCACCCT
TGGATCTATGAGTAAACTAATGTTTGGTTGAGGAGCCTAATTGTTCCTGC
AGTTAGACTTATCCCTATCCCTATCCCTATTTCCTTATTTATGGTTACTC
CTTGTTGGTGAACTGTTATGAAGTATTGAGTTAAATTGAGACCAATCCTG
GTTATGTTGGCTGCTTTCATTCTTGTGGTTGCCATATACAATATTTAAGC
TTTTTTGTTGACTGTATTATGAATT
back to top