CX291496

Overview
NameCX291496
Unique NameCX291496
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length185
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS18_ARATH (3-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana GN=FAE1 PE=1 SV=1)

HSP 1 Score: 85.8853 bits (211), Expect = 6.871e-17
Identity = 36/60 (60.00%), Postives = 48/60 (80.00%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y+LVH VRTH GADDK++RCV +E+D+ GK+G+ LSKD+  +AG  L  NI T+GPL+LP
Sbjct:  293 YKLVHTVRTHTGADDKSFRCVQQEDDESGKIGVCLSKDITNVAGTTLTKNIATLGPLILP 352          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS13_ARATH (3-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana GN=HIC PE=2 SV=1)

HSP 1 Score: 81.6481 bits (200), Expect = 1.296e-15
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y L H+VRTHKG+ DK Y C  ++ED +G VG++LSK+L  +AG++LK+N+T +GPLVLP
Sbjct:  266 YELTHIVRTHKGSSDKHYTCAEQKEDSKGIVGVALSKELTVVAGDSLKTNLTALGPLVLP 325          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS14_ARATH (Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis thaliana GN=KCS14 PE=2 SV=1)

HSP 1 Score: 81.2629 bits (199), Expect = 1.692e-15
Identity = 34/60 (56.67%), Postives = 47/60 (78.33%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y L H+VRTHKG+ DK Y C  ++ED +G VG++LSK+L  +AG+ LK+N+T +GPLVLP
Sbjct:  259 YELTHIVRTHKGSSDKHYTCAEQKEDSKGIVGVALSKELTVVAGDTLKTNLTALGPLVLP 318          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS16_ARATH (3-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana GN=KCS16 PE=2 SV=1)

HSP 1 Score: 80.4925 bits (197), Expect = 2.887e-15
Identity = 36/60 (60.00%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y LVH VR H GADD++Y C  +EED++G VG+SLSK+L  +A   LK NI T+GPLVLP
Sbjct:  291 YELVHTVRVHTGADDRSYECATQEEDEDGIVGVSLSKNLPMVAARTLKINIATLGPLVLP 350          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS20_ARATH (Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis thaliana GN=KCS20 PE=2 SV=1)

HSP 1 Score: 78.5666 bits (192), Expect = 1.097e-14
Identity = 31/60 (51.67%), Postives = 50/60 (83.33%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y L+HVVR +K  DD+AYRC++++ D + K G+S++KD++++AG+ LK N+T++GPLVLP
Sbjct:  257 YELLHVVRKNKAKDDRAYRCIYQDIDSDEKQGVSITKDVISVAGDMLKMNLTSLGPLVLP 316          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS8_ARATH (3-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana GN=KCS8 PE=2 SV=1)

HSP 1 Score: 74.7146 bits (182), Expect = 1.584e-13
Identity = 31/60 (51.67%), Postives = 45/60 (75.00%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y LVH VR H G+DD+++ C  +EED++G +G++L+K+L  +A   LK NI T+GPLVLP
Sbjct:  283 YELVHTVRIHTGSDDRSFECATQEEDEDGIIGVTLTKNLPMVAARTLKINIATLGPLVLP 342          
BLAST of CX291496 vs. ExPASy Swiss-Prot
Match: KCS7_ARATH (3-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana GN=KCS7 PE=2 SV=1)

HSP 1 Score: 72.4034 bits (176), Expect = 7.861e-13
Identity = 30/60 (50.00%), Postives = 46/60 (76.67%), Query Frame = 3
Query:    3 YRLVHVVRTHKGADDKAYRCVFEEEDKEGKVGISLSKDLMAIAGEALKSNITTIGPLVLP 182
            Y+L H++RTH G+D ++Y  V ++ D+EGKVG++LSK L+ +A +ALK N+  +GP VLP
Sbjct:  253 YKLQHIIRTHVGSDTESYESVMQQVDEEGKVGVALSKQLVRVASKALKINVVQLGPRVLP 312          
The following BLAST results are available for this feature:
BLAST of CX291496 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 17
Match NameE-valueIdentityDescription
KCS18_ARATH6.871e-1760.003-ketoacyl-CoA synthase 18 OS=Arabidopsis thaliana... [more]
KCS13_ARATH1.296e-1556.673-ketoacyl-CoA synthase 13 OS=Arabidopsis thaliana... [more]
KCS14_ARATH1.692e-1556.67Probable 3-ketoacyl-CoA synthase 14 OS=Arabidopsis... [more]
KCS16_ARATH2.887e-1560.003-ketoacyl-CoA synthase 16 OS=Arabidopsis thaliana... [more]
KCS20_ARATH1.097e-1451.67Probable 3-ketoacyl-CoA synthase 20 OS=Arabidopsis... [more]
KCS8_ARATH1.584e-1351.673-ketoacyl-CoA synthase 8 OS=Arabidopsis thaliana ... [more]
KCS7_ARATH7.861e-1350.003-ketoacyl-CoA synthase 7 OS=Arabidopsis thaliana ... [more]

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Properties
Property NameValue
Genbank descriptionC03009G10SK OF2 Citrus clementina cDNA clone C03009G10, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291496 ID=CX291496; Name=CX291496; organism=Citrus clementina; type=EST; length=185bp
AGTACCGGCTGGTTCACGTGGTTCGAACCCACAAAGGAGCTGACGACAAG
GCTTATCGCTGCGTGTTTGAGGAGGAAGACAAAGAGGGCAAAGTTGGGAT
TTCGCTGTCGAAAGATCTCATGGCAATAGCTGGGGAAGCTCTCAAATCGA
ACATCACCACGATTGGTCCCCTGGTCCTTCCTGCT
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