CX291499

Overview
NameCX291499
Unique NameCX291499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_PYRAB (Translation initiation factor 6 OS=Pyrococcus abyssi GN=eif6 PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 2.302e-24
Identity = 67/182 (36.81%), Postives = 95/182 (52.20%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            +PV++ SI  +RIIG L  GN N +L+P    D E++ ++++  +  +   I     + +ALGN I  ND  AL      R+  + I D+LGVEV R  IAG   VGS    +N+GGLVHP  S E+L+ LS L +V +  GT N G   +   +  N      G  TT  E+  IE    L
Sbjct:   45 VPVIEASIMKSRIIGTLATGNSNAILVPWYVWDTEIERIKSAFKEYGIETEIVPFRTKYTALGNLILTNDKAALVSAKFSRDEAKEIGDILGVEVERGLIAGLHAVGSAGVVTNKGGLVHPEASDEELEWLSELFKVDVYVGTANMGVPYVGTCMLANSNGVVVGHLTTGPEIVKIEEALGL 226          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METB6 (Translation initiation factor 6 OS=Methanoregula boonei (strain 6A8) GN=eif6 PE=3 SV=1)

HSP 1 Score: 111.309 bits (277), Expect = 3.927e-24
Identity = 65/177 (36.72%), Postives = 94/177 (53.11%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            + ++ T+I G+ IIG L AGN  GL++    TD+EL  L+        V  + E ++A GN I  ND  A  H DL  E  E I   LGVEV   T+ G    G     +N+G +VHP  + +++  L T+  +P+  GT+N GS ++  GL VND     G+ T+  EL  +E VF
Sbjct:   44 VELLVTTIQGSAIIGSLVAGNSRGLVVSGLATDEELAVLKKHRK----VMLLCETMNAAGNVIMANDTFAAVHPDLPAEVAEEIGAFLGVEVIHLTLGGVRTTGMAGVATNKGVIVHPRATAQEIARLETVSGIPVGTGTINMGSGLVGTGLLVNDTGYLAGNATSGFELGRVEDVF 216          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_THEGJ (Translation initiation factor 6 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 110.923 bits (276), Expect = 5.129e-24
Identity = 65/177 (36.72%), Postives = 93/177 (52.54%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRI---EERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +P+++TS+  +RI+G   AGN N L++P    D EL  +   L +  +   +   + RL+A GN I  ND  AL   D  RE    I D+LGV V R  IA    VGS    +N+GGLVHP  + E+L+ LS L +V +  GT N G   + + +  N +    G  TT  E+  IE
Sbjct:   45 VPLIETSVMKSRIVGIFVAGNSNALIVPWYIWDAELDFINAQLREYGIDMEVVPFQSRLTAFGNLILANDKGALVSKDFTREEARKIEDILGVPVERGVIADYTAVGSVGVVTNKGGLVHPEATDEELEWLSDLFKVDVYVGTANMGVPFVGSCMIANSYGVVVGHLTTGPEIVKIE 221          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METBU (Translation initiation factor 6 OS=Methanococcoides burtonii (strain DSM 6242) GN=eif6 PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.143e-23
Identity = 67/180 (37.22%), Postives = 99/180 (55.00%), Query Frame = 2
Query:   59 AELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            AE  DV  V+ T I G+ ++G L  GN NG L+       +L+ +      +V V+ + + L+A+GN I  ND  AL H ++   + E+I+ VLGV+V R TIAG   VG     +NRG LVHP  + ++L  L  +  +P+  GT N GS+ + +GL  N      GS+TT  EL  +E
Sbjct:   39 AEQLDV-KVISTLINGSIVVGSLSKGNSNGFLISRDANVSDLKDV------EVPVEVLPDMLTAVGNVILANDTAALVHPEMTDSSIEVISRVLGVDVHRGTIAGLGTVGMAGVVTNRGLLVHPMVTPDELSVLEDVFALPIELGTTNYGSQAVGSGLLANSKGYVAGSNTTGHELGRVE 211          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_PYRKO (Translation initiation factor 6 OS=Pyrococcus kodakaraensis GN=eif6 PE=3 SV=1)

HSP 1 Score: 109.383 bits (272), Expect = 1.492e-23
Identity = 66/178 (37.08%), Postives = 97/178 (54.49%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGV-EVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +P+++TSI  +RI+G   AGN N +++P    D EL+ ++ +L +    + V   + RL+ALGN I  ND  AL   +  RE    I ++LGV EV R  IA    VGS    +N+GGLVHP  + E+L+ LS L  V +  GT N G   + + +  N +    G  TT  E+  IE
Sbjct:   45 VPIIETSIMKSRIVGIFAAGNSNAIIVPWYIWDAELERIKTALNEFGIDMDVVPFKSRLTALGNLILTNDKAALVSKEFTREEANAIGEILGVDEVERGMIASYRSVGSVGVVTNKGGLVHPEATDEELEWLSDLFGVDIYVGTANMGVPFVGSCMLANSYGVVVGHLTTGPEIVKIE 222          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULIY (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.G.57.14 / Yellowstone #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.949e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULIN (Translation initiation factor 6 OS=Sulfolobus islandicus (strain Y.N.15.51 / Yellowstone #2) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.949e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULIL (Translation initiation factor 6 OS=Sulfolobus islandicus (strain L.S.2.15 / Lassen #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.997 bits (271), Expect = 1.949e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFSVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULIM (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.14.25 / Kamchatka #1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.324e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULIK (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.4 / Kamchatka #3) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.324e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
The following BLAST results are available for this feature:
BLAST of CX291499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_PYRAB2.302e-2436.81Translation initiation factor 6 OS=Pyrococcus abys... [more]
IF6_METB63.927e-2436.72Translation initiation factor 6 OS=Methanoregula b... [more]
IF6_THEGJ5.129e-2436.72Translation initiation factor 6 OS=Thermococcus ga... [more]
IF6_METBU1.143e-2337.22Translation initiation factor 6 OS=Methanococcoide... [more]
IF6_PYRKO1.492e-2337.08Translation initiation factor 6 OS=Pyrococcus koda... [more]
IF6_SULIY1.949e-2338.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIN1.949e-2338.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIL1.949e-2338.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIM3.324e-2338.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULIK3.324e-2338.15Translation initiation factor 6 OS=Sulfolobus isla... [more]

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Properties
Property NameValue
Genbank descriptionC03009H04SK OF2 Citrus clementina cDNA clone C03009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291499 ID=CX291499; Name=CX291499; organism=Citrus clementina; type=EST; length=613bp
GAGGGCTTCTTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCA
CATTTGAGGCTGAGTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATT
GGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCT
TCTCTTGCCACACACTACCACAGACCAAGAACTTCAACACTTGAGGAACA
GCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCC
CTGGGCAATTGTATAGCATGCAACGACCATGTTGCTCTTACACACACAGA
TCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAG
TTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCC
TTCTCCAACAGAGGAGGCTTGGTCCACCCTCACACATCCATTGAAGACTT
GGATGAACTTTCAACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGA
ACCGTGGAAGCGAAGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACA
GCATTCTGTGGATCAGACACCACAGCAACTGAACTCTCTGTTATTGAGAG
TGTTTTCAAGTTG
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