CX291499

Overview
NameCX291499
Unique NameCX291499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULIA (Translation initiation factor 6 OS=Sulfolobus islandicus (strain M.16.27) GN=eif6 PE=3 SV=1)

HSP 1 Score: 108.227 bits (269), Expect = 3.324e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQ-TIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE  R+  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LIEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEVLNSKVTALGNTILTNNKAALIYPEFNDIEEKIIKETLGVEEIRRGKIAQMITVGSVGVVTNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIRSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_SULSO (Translation initiation factor 6 OS=Sulfolobus solfataricus GN=eif6 PE=3 SV=1)

HSP 1 Score: 107.842 bits (268), Expect = 4.342e-23
Identity = 66/173 (38.15%), Postives = 100/173 (57.80%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVE-VFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +++  I  + ++G   +GN NG+LLP +T D E + L+ +L D   V+ +  +++ALGN I  N+  AL + + +   E++I + LGVE + R  IA  I VGS    +N+GGLVH  TS ++L EL  L  V +  GTVN GS  I +GL  ND     G+ TT  E+  I+
Sbjct:   47 LLEAEISRSFLLGIFISGNDNGILLPKSTIDDEFRFLKENLRD-CRVEILNSKVTALGNTILANNKAALIYPEFNDIEEKIIKETLGVEDIKRGKIAQMITVGSVGVITNKGGLVHVDTSEKELKELEKLFGVKIDIGTVNFGSVFIKSGLVANDKGTLVGASTTGPEILRIQ 218          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_NITMS (Translation initiation factor 6 OS=Nitrosopumilus maritimus (strain SCM1) GN=eif6 PE=3 SV=1)

HSP 1 Score: 106.686 bits (265), Expect = 9.672e-23
Identity = 62/172 (36.05%), Postives = 90/172 (52.33%), Query Frame = 2
Query:   92 TSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            TSI  TR+IG LC  N  G+LLP T    E   L+  L  +V V  ++ +L+ALGN I  ND  A+    L +E  + I+DVLGVE  ++ IAG    G     +N G  +HP    ED+   S LL V +   ++N G   +++G+  N+     GS TT  E+ ++   F
Sbjct:   50 TSIANTRLIGALCIMNNKGILLPKTAYQNEFDFLKKELDLEVGV--LDSKLTALGNVICANDKGAVVSPWLSKEDCQTISDVLGVETIQKKIAGFNQTGVVMVANNSGAAIHPEADEEDMKTFSNLLGVKIEQSSINNGIPYVSSGILANNNCIIVGSLTTGPEIMMLTRAF 219          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METAC (Translation initiation factor 6 OS=Methanosarcina acetivorans GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.916 bits (263), Expect = 1.650e-22
Identity = 62/174 (35.63%), Postives = 95/174 (54.60%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            + V++T + G+ ++G L  GN NG +LP+     E+Q   +     + V  + +RL+A+GN +  ND  AL H DL  +  E IA  L V+V+R TIAG   VG     +N+G LVHP  +  + + L  +   P+  GT N G++++ +GL  N      GS+TT  EL  IE
Sbjct:   44 VRVIETLVNGSIVVGALSRGNSNGFMLPYGAR-AEMQRFTD-----IPVGILPDRLNAVGNIVFANDSAALVHPDLSDKALEAIARTLKVDVYRGTIAGIKNVGMAGVVTNKGLLVHPKVTASEREVLEKIFGFPVNIGTTNFGTQMLGSGLLANSKNFVAGSETTGPELGRIE 211          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_THEPD (Translation initiation factor 6 OS=Thermofilum pendens (strain Hrk 5) GN=eif6 PE=3 SV=1)

HSP 1 Score: 105.531 bits (262), Expect = 2.155e-22
Identity = 59/177 (33.33%), Postives = 92/177 (51.98%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            +   + S+ GTR++G   AGN NGL++P    D EL+HL++ L   +VV   + R + +GN +  ND+  +    L +   + IAD LGVE  + +I     VGS    +NRG  + P  + E++  +   L+V     TVNRG   +  GL  N   A  G DTT  E+  ++ +F
Sbjct:   46 VDAFRVSVAGTRLVGIFLAGNNNGLVVPRVILDSELEHLKSLLDVNIVVLE-DVRETGIGNLVLANDNGCVASQILPKSAVDRIADALGVECIQMSIGDVPFVGSLSVATNRGVALPPLATEEEIKSVEEALKVKANVLTVNRGKMFLRTGLVANSKGALVGEDTTGHEMMQLQRIF 221          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_NATPD (Translation initiation factor 6 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif6 PE=3 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.188e-22
Identity = 68/188 (36.17%), Postives = 92/188 (48.94%), Query Frame = 2
Query:   35 ESFYSTFEAELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            ES  S FE EL   +  V T+I G+  +G L  GN+NGLL+    TD+E   L       VV   +   ++A GN +  N+  A  H DL R+    I + L V V R  IA    VG+    ++ G L HP T+ E LD L  L  V    GT+N G  ++ +GL  N+     G +TT  EL  IE
Sbjct:   31 ESLQSEFETELD--VTAVPTTIAGSGTVGSLAVGNENGLLVTERVTDRERDRLETETGLPVV--ELPGNINAAGNVVLANNEGAFVHPDLSRDALSAIEEALSVPVERGRIADVQTVGTAAVVTDDGVLSHPKTTDEKLDFLEELFGVYADIGTINYGGPLVGSGLVANNTGYIAGEETTGPELGRIE 214          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METJA (Translation initiation factor 6 OS=Methanocaldococcus jannaschii GN=eif6 PE=1 SV=1)

HSP 1 Score: 103.605 bits (257), Expect = 8.188e-22
Identity = 69/190 (36.32%), Postives = 106/190 (55.79%), Query Frame = 2
Query:   62 ELADVIPV--VKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            E+++V+    ++T+IGG+ ++G L   NK GLLLP    D+EL  ++N L +    + V+ I+ + +ALGN I  ND  AL   +L ++ ++ I D L VEV   TIA    VGS    +N+G L HP    ++L+ L +L +V  +  GT N+G+  + A +  N   A  G DTT  EL +IE    L
Sbjct:   39 EVSEVLETKCLQTNIGGSSLVGSLSVANKYGLLLPKIVEDEELDRIKNFLKENNLDLNVEIIKSKNTALGNLILTNDKGALISPEL-KDFKKDIEDSLNVEVEIGTIAELPTVGSNAVVTNKGCLTHPLVEDDELEFLKSLFKVEYIGKGTANKGTTSVGACIIANSKGAVVGGDTTGPELLIIEDALGL 227          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_HALWD (Translation initiation factor 6 OS=Haloquadratum walsbyi (strain DSM 16790) GN=eif6 PE=3 SV=1)

HSP 1 Score: 102.834 bits (255), Expect = 1.397e-21
Identity = 65/184 (35.33%), Postives = 94/184 (51.09%), Query Frame = 2
Query:   50 TFEAELADV-IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            T +A  A++ IP V T+IGG+  +G L  GN+NG+L+    T +E + +  +    V V  +  R++A GN I  ND+ A  H DL  E  E I   L V V R  +A    VG+    +NRG L HP     +L+ +   L V    GTVN G+ ++ +G+         G DTT  EL+ IE
Sbjct:   33 TADAMAAELDIPAVATTIGGSGTVGALATGNENGILVTSNVTMREKEAIETTA--SVSVTELPGRINAAGNVILANDYGAYVHPDLSTEAVESIESALNVPVARGKLADVRTVGTAAVATNRGVLCHPKAREPELEAIEDHLDVRADIGTVNYGAPLVGSGIVAGQTGYVVGEDTTGPELTRIE 214          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METPE (Translation initiation factor 6 OS=Methanosphaerula palustris (strain ATCC BAA-1556 / DSM 19958 / E1-9c) GN=eif6 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.111e-21
Identity = 60/177 (33.90%), Postives = 92/177 (51.98%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            + +VKT + G+ IIG L +GN  G ++       E++    ++ +   V  +E  ++A GN I  ND +A  H D+D  T E I  VLGV V R T++G   VG     +NRG LVH  ++  +L  L +   +P+  GT+N GS ++  GL  N      G +T+  E+  I  VF
Sbjct:   44 VTLVKTHVQGSSIIGSLVSGNSRGAIVSGLAYPDEIR----AIEEYREVMLLEGSMNAAGNVILANDQMAAVHPDMDNATIEQIHSVLGVPVIRLTLSGIKTVGMAGYATNRGILVHARSAGRELATLESTTDLPVGTGTINMGSGLVGTGLLANSTGYLAGIETSGFEMGRIADVF 216          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_CENSY (Translation initiation factor 6 OS=Cenarchaeum symbiosum GN=eif6 PE=3 SV=1)

HSP 1 Score: 101.679 bits (252), Expect = 3.111e-21
Identity = 55/172 (31.98%), Postives = 95/172 (55.23%), Query Frame = 2
Query:   92 TSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            TS+  TR++G L   N +G+++P T ++ E +  +      VVV  ++ + +ALGN I+ ND   +      RE   +IAD LG+EV ++ IAG   VG+    ++ GG++HP T  ED+  +S ++ V +   T+N G   +++GL  N  +   GS T+  E+ ++   F
Sbjct:   50 TSVANTRLMGTLMVLNNSGIIMPSTISEIEYEFYKKHTDLNVVV--LDTKFTALGNMISVNDRGGVVSPVFPREEVRIIADALGIEVIQRRIAGYNQVGAMMVATSGGGIIHPETDGEDVKRISEVMGVHMEPATINGGIPFVSSGLLANKKSVVAGSFTSGPEIMMLTRAF 219          
The following BLAST results are available for this feature:
BLAST of CX291499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_SULIA3.324e-2338.15Translation initiation factor 6 OS=Sulfolobus isla... [more]
IF6_SULSO4.342e-2338.15Translation initiation factor 6 OS=Sulfolobus solf... [more]
IF6_NITMS9.672e-2336.05Translation initiation factor 6 OS=Nitrosopumilus ... [more]
IF6_METAC1.650e-2235.63Translation initiation factor 6 OS=Methanosarcina ... [more]
IF6_THEPD2.155e-2233.33Translation initiation factor 6 OS=Thermofilum pen... [more]
IF6_NATPD8.188e-2236.17Translation initiation factor 6 OS=Natronomonas ph... [more]
IF6_METJA8.188e-2236.32Translation initiation factor 6 OS=Methanocaldococ... [more]
IF6_HALWD1.397e-2135.33Translation initiation factor 6 OS=Haloquadratum w... [more]
IF6_METPE3.111e-2133.90Translation initiation factor 6 OS=Methanosphaerul... [more]
IF6_CENSY3.111e-2131.98Translation initiation factor 6 OS=Cenarchaeum sym... [more]

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Properties
Property NameValue
Genbank descriptionC03009H04SK OF2 Citrus clementina cDNA clone C03009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291499 ID=CX291499; Name=CX291499; organism=Citrus clementina; type=EST; length=613bp
GAGGGCTTCTTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCA
CATTTGAGGCTGAGTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATT
GGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCT
TCTCTTGCCACACACTACCACAGACCAAGAACTTCAACACTTGAGGAACA
GCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCC
CTGGGCAATTGTATAGCATGCAACGACCATGTTGCTCTTACACACACAGA
TCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAG
TTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCC
TTCTCCAACAGAGGAGGCTTGGTCCACCCTCACACATCCATTGAAGACTT
GGATGAACTTTCAACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGA
ACCGTGGAAGCGAAGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACA
GCATTCTGTGGATCAGACACCACAGCAACTGAACTCTCTGTTATTGAGAG
TGTTTTCAAGTTG
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