CX291499

Overview
NameCX291499
Unique NameCX291499
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length613
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19
Identity = 61/172 (35.47%), Postives = 89/172 (51.74%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            VV+T I  + +IG +  GN NG ++   T D+E     N L +   V R++ +++A GN I  ND  AL H  L  +  E I   L VEV R TI G   VG     +N+G LVHP  + E+L  L  L ++P+  GTV+ GS ++ + +         G+ T+  EL  IE
Sbjct:   46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAILATTKGLITGTRTSGPELGRIE 213          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19
Identity = 61/188 (32.45%), Postives = 94/188 (50.00%), Query Frame = 2
Query:   56 EAELADVI-------PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            + ELAD +       P++ T++GG   +G L  GN+NG+L+    T++E   +  +   +V    +   ++A GN +  ND+ A  H DL RE+   I + LGV V R  +     VG+    +N G L HP ++  +L  +   L V    GT+N G+ +I +GL   D     G DTT  EL  IE
Sbjct:   30 DEELADALGEELGAEPLL-TTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGPELGRIE 214          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 2.912e-19
Identity = 63/186 (33.87%), Postives = 98/186 (52.69%), Query Frame = 2
Query:   59 AELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607
            AE  DV  V++T + G+ +IG L  GN  G ++     D EL+ L+    D ++   + E ++A GN I  ND  A+ H D+     EM+AD L V++   + AG   VG  C+ +N G L+   ++ E++++L   +    V +  G+VN GS +I  GL +N      G+ TT  EL  IE VF
Sbjct:   39 AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNATTGYELGRIEDVF 219          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 6.488e-19
Identity = 51/174 (29.31%), Postives = 90/174 (51.72%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            + V+ T I G+ ++G + A N  G ++       EL+ L  SL   V    IE  ++  GN +  ND   + + +++    E +AD + +E+ + T+ G   VG     +NRGGL +P+ +  +  +L  +  V ++ GTVN G++++ +GL  N      G DTT  EL ++E
Sbjct:   41 VDVIVTKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVANSKGYVVGRDTTGFELGIVE 210          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 2.465e-18
Identity = 63/183 (34.43%), Postives = 97/183 (53.01%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            IP  + +I  + +IG LC GN NGLL+P+ TT++EL+ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT+  E+  IE    L
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANTKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.220e-18
Identity = 61/183 (33.33%), Postives = 99/183 (54.10%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            IPV + +I  + +IG LC GN NGLL+P+  T +E+  +++ L +    V +++++ + +A GN I  N+   +   +L +   ++I DVLGVE      A    VGS    +++G LVHP T   +L+ ++ +L+V  V  GT NRG   + + +  N   A  G DT+  EL  IE    L
Sbjct:   44 IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILANTKGAVIGGDTSGPELLKIEEALDL 225          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 3.220e-18
Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT+  E+  IE    L
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18
Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613
            IP  + +I  + +IG LC GN NGLL+P  TT++E++ ++  L +    V ++R++ + +A GN I  N+   +   +L R   + I DVL VE      A    VGS    +++G LVHP T   +L+ +  +L+V  V  GT NRG   + A +  N   A  G DT+  E+  IE    L
Sbjct:   44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.173e-18
Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 2
Query:   83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            V K SIG + +IG + + N NG+++     D  + +L++   +   +  I  +L+A GN I  NDH AL H        + I DVLGVE  + +IAG   VGS    ++RG LV      +++  LS L ++ +  GT N GS  + A +  N      G  TT+ EL  I+
Sbjct:   46 VYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSIELGRID 213          
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 7.173e-18
Identity = 57/178 (32.02%), Postives = 94/178 (52.81%), Query Frame = 2
Query:   77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598
            +PV   +IG + +IG LC  N  G++LP  T ++E   L + L +    ++V+ I  + +A GN I  ND   +   +L  +  +   D+  VEV  + IA    VGS    +N+G LVHP T+ E+L+ +  +L++  +  GT ++G+  + A +  N   A  G DTT  E+  IE
Sbjct:   44 VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIGGDTTGPEMLKIE 220          
The following BLAST results are available for this feature:
BLAST of CX291499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 63
Match NameE-valueIdentityDescription
IF6_UNCMA2.230e-1935.47Translation initiation factor 6 OS=Uncultured meth... [more]
IF6_HALLT2.230e-1932.45Translation initiation factor 6 OS=Halorubrum lacu... [more]
IF6_METLZ2.912e-1933.87Translation initiation factor 6 OS=Methanocorpuscu... [more]
IF6_ARCFU6.488e-1929.31Translation initiation factor 6 OS=Archaeoglobus f... [more]
IF6_METMP2.465e-1834.43Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METVS3.220e-1833.33Translation initiation factor 6 OS=Methanococcus v... [more]
IF6_METM63.220e-1833.88Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_METM75.492e-1833.88Translation initiation factor 6 OS=Methanococcus m... [more]
IF6_PICTO7.173e-1833.14Translation initiation factor 6 OS=Picrophilus tor... [more]
IF6_META37.173e-1832.02Translation initiation factor 6 OS=Methanococcus a... [more]

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Properties
Property NameValue
Genbank descriptionC03009H04SK OF2 Citrus clementina cDNA clone C03009H04, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291499 ID=CX291499; Name=CX291499; organism=Citrus clementina; type=EST; length=613bp
GAGGGCTTCTTGCTTGGTTGCAATTGGAGGTTCTGAAAGCTTCTACAGCA
CATTTGAGGCTGAGTTAGCAGATGTCATTCCTGTTGTTAAAACATCTATT
GGTGGCACTAGGATTATCGGCCGGCTTTGTGCTGGAAACAAAAATGGGCT
TCTCTTGCCACACACTACCACAGACCAAGAACTTCAACACTTGAGGAACA
GCCTACCTGATCAAGTTGTCGTTCAGCGTATTGAAGAGAGGCTATCTGCC
CTGGGCAATTGTATAGCATGCAACGACCATGTTGCTCTTACACACACAGA
TCTTGACAGGGAAACAGAGGAAATGATTGCAGATGTTCTTGGAGTAGAAG
TTTTTAGGCAGACAATTGCTGGTAATATCCTTGTTGGCAGTTACTGTTCC
TTCTCCAACAGAGGAGGCTTGGTCCACCCTCACACATCCATTGAAGACTT
GGATGAACTTTCAACTCTCTTGCAAGTACCTTTGGTGGCTGGGACTGTGA
ACCGTGGAAGCGAAGTCATAGCTGCTGGGTTAACTGTGAATGACTGGACA
GCATTCTGTGGATCAGACACCACAGCAACTGAACTCTCTGTTATTGAGAG
TGTTTTCAAGTTG
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