CX291499
Overview
Libraries
Analyses
This EST is derived from or has results from the following analyses
Homology
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_UNCMA (Translation initiation factor 6 OS=Uncultured methanogenic archaeon RC-I GN=eif6 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19 Identity = 61/172 (35.47%), Postives = 89/172 (51.74%), Query Frame = 2 Query: 83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598 VV+T I + +IG + GN NG ++ T D+E N L + V R++ +++A GN I ND AL H L + E I L VEV R TI G VG +N+G LVHP + E+L L L ++P+ GTV+ GS ++ + + G+ T+ EL IE Sbjct: 46 VVRTLINESTLIGSMMTGNSNGFIVSDLTLDREA----NLLQEHGKVTRLKGKMTAAGNLILANDTAALVHPALTDKNIEAIEKTLKVEVRRGTIGGLKTVGMAGCATNKGILVHPRATEEELTVLEDLFKLPVDIGTVSFGSPLVGSAILATTKGLITGTRTSGPELGRIE 213
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_HALLT (Translation initiation factor 6 OS=Halorubrum lacusprofundi (strain ATCC 49239 / DSM 5036 / JCM 8891 / ACAM 34) GN=eif6 PE=3 SV=1) HSP 1 Score: 95.5153 bits (236), Expect = 2.230e-19 Identity = 61/188 (32.45%), Postives = 94/188 (50.00%), Query Frame = 2 Query: 56 EAELADVI-------PVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598 + ELAD + P++ T++GG +G L GN+NG+L+ T++E + + +V + ++A GN + ND+ A H DL RE+ I + LGV V R + VG+ +N G L HP ++ +L + L V GT+N G+ +I +GL D G DTT EL IE Sbjct: 30 DEELADALGEELGAEPLL-TTVGGANTVGSLATGNENGVLVSARATEREQSRIAEAADCEV--GELPGEINAAGNVVLANDYGAYVHPDLPRESIVTIRETLGVPVVRGDLGDVRTVGTAAVANNTGVLCHPKSTESELQAVEEALDVRADLGTINYGAPLIGSGLIATDEGYVVGEDTTGPELGRIE 214
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METLZ (Translation initiation factor 6 OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eif6 PE=3 SV=1) HSP 1 Score: 95.1301 bits (235), Expect = 2.912e-19 Identity = 63/186 (33.87%), Postives = 98/186 (52.69%), Query Frame = 2 Query: 59 AELADVIPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLL---QVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVF 607 AE DV V++T + G+ +IG L GN G ++ D EL+ L+ D ++ + E ++A GN I ND A+ H D+ EM+AD L V++ + AG VG C+ +N G L+ ++ E++++L + V + G+VN GS +I GL +N G+ TT EL IE VF Sbjct: 39 AEALDV-EVIETFVQGSSVIGLLLTGNSRGFVVSGLIQDSELEILQE-YGDCLL---LGEEMNAAGNVILTNDSFAVVHPDMSSAMREMVADFLKVKIIPMSFAGVGTVGMTCACTNTGVLLPARSTPEEIEKLERSIDDANVAIGTGSVNMGSGLIGTGLLINSKGYLAGNATTGYELGRIEDVF 219
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_ARCFU (Translation initiation factor 6 OS=Archaeoglobus fulgidus GN=eif6 PE=3 SV=1) HSP 1 Score: 93.9745 bits (232), Expect = 6.488e-19 Identity = 51/174 (29.31%), Postives = 90/174 (51.72%), Query Frame = 2 Query: 77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598 + V+ T I G+ ++G + A N G ++ EL+ L SL V IE ++ GN + ND + + +++ E +AD + +E+ + T+ G VG +NRGGL +P+ + + +L + V ++ GTVN G++++ +GL N G DTT EL ++E Sbjct: 41 VDVIVTKIAGSELVGAMMALNSRGAVVSDQVLSSELRELEKSLDVLV----IETPMTCFGNNLLINDRGGIANPEMESSVVEKVADFMDIELVKGTVGGIKTVGMAAVVTNRGGLANPNINEWEAKKLQEVAGVEVLTGTVNFGTDMVGSGLVANSKGYVVGRDTTGFELGIVE 210
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METMP (Translation initiation factor 6 OS=Methanococcus maripaludis GN=eif6 PE=3 SV=1) HSP 1 Score: 92.0485 bits (227), Expect = 2.465e-18 Identity = 63/183 (34.43%), Postives = 97/183 (53.01%), Query Frame = 2 Query: 77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613 IP + +I + +IG LC GN NGLL+P+ TT++EL+ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG + A + N A G DT+ E+ IE L Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPNITTEKELELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQDILRVDYVERGTANRGVTSVGACILANTKGAVVGGDTSGPEILKIEEALDL 225
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METVS (Translation initiation factor 6 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=eif6 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.220e-18 Identity = 61/183 (33.33%), Postives = 99/183 (54.10%), Query Frame = 2 Query: 77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVA-GTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613 IPV + +I + +IG LC GN NGLL+P+ T +E+ +++ L + V +++++ + +A GN I N+ + +L + ++I DVLGVE A VGS +++G LVHP T +L+ ++ +L+V V GT NRG + + + N A G DT+ EL IE L Sbjct: 44 IPVTQLNISNSSLIGSLCVGNSNGLLVPNIVTSKEIALIKDFLKENSLDVNLEKLKAKNTAFGNLILTNNKGCIISEEL-QNFRKVIEDVLGVESGVGNYASLPTVGSNGVATDKGCLVHPLTDELELEWITDVLKVDYVGRGTANRGVTSVGSCILANTKGAVIGGDTSGPELLKIEEALDL 225
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METM6 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=eif6 PE=3 SV=1) HSP 1 Score: 91.6633 bits (226), Expect = 3.220e-18 Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 2 Query: 77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613 IP + +I + +IG LC GN NGLL+P TT++E++ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG + A + N A G DT+ E+ IE L Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELATVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_METM7 (Translation initiation factor 6 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=eif6 PE=3 SV=1) HSP 1 Score: 90.8929 bits (224), Expect = 5.492e-18 Identity = 62/183 (33.88%), Postives = 96/183 (52.46%), Query Frame = 2 Query: 77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPD---QVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIESVFKL 613 IP + +I + +IG LC GN NGLL+P TT++E++ ++ L + V ++R++ + +A GN I N+ + +L R + I DVL VE A VGS +++G LVHP T +L+ + +L+V V GT NRG + A + N A G DT+ E+ IE L Sbjct: 44 IPATQLNISNSSLIGSLCVGNSNGLLVPDITTEKEVELIKMFLKENSLDVNLERLKAKNTAFGNLILTNNKGCIISEELSR-FRKTIEDVLDVESGVGNYAELPTVGSNGVATDKGCLVHPLTDELELEWIQNILRVDYVERGTANRGVTSVGACILANSKGAVVGGDTSGPEILKIEEALDL 225
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_PICTO (Translation initiation factor 6 OS=Picrophilus torridus GN=eif6 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.173e-18 Identity = 57/172 (33.14%), Postives = 87/172 (50.58%), Query Frame = 2 Query: 83 VVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQVVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLVAGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598 V K SIG + +IG + + N NG+++ D + +L++ + + I +L+A GN I NDH AL H + I DVLGVE + +IAG VGS ++RG LV +++ LS L ++ + GT N GS + A + N G TT+ EL I+ Sbjct: 46 VYKISIGNSFLIGSMLSMNSNGIVV----ADHGIDNLKSLNINGRNILSINNKLNAAGNNIIANDHAALIHKSFPDSIRKKIEDVLGVETVKGSIAGIKTVGSVAVLNDRGMLVTSEADEDEIKYLSDLFKINVKTGTANFGSNYVGASIIANSNGILVGEATTSIELGRID 213
BLAST of CX291499 vs. ExPASy Swiss-Prot
Match: IF6_META3 (Translation initiation factor 6 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=eif6 PE=3 SV=1) HSP 1 Score: 90.5077 bits (223), Expect = 7.173e-18 Identity = 57/178 (32.02%), Postives = 94/178 (52.81%), Query Frame = 2 Query: 77 IPVVKTSIGGTRIIGRLCAGNKNGLLLPHTTTDQELQHLRNSLPDQ---VVVQRIEERLSALGNCIACNDHVALTHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCSFSNRGGLVHPHTSIEDLDELSTLLQVPLV-AGTVNRGSEVIAAGLTVNDWTAFCGSDTTATELSVIE 598 +PV +IG + +IG LC N G++LP T ++E L + L + ++V+ I + +A GN I ND + +L + + D+ VEV + IA VGS +N+G LVHP T+ E+L+ + +L++ + GT ++G+ + A + N A G DTT E+ IE Sbjct: 44 VPVKALNIGNSSLIGALCCANSYGIILPPFTLNREKTILSDFLKENDIDIIVKEINAKNTAFGNLILLNDKGCIISEEL-ADFRKTFEDIFDVEVVAKNIAELPTVGSNGVATNKGALVHPDTTDEELELIKDVLKLKCIERGTASKGTPSVGACIVANSNGAVIGGDTTGPEMLKIE 220 The following BLAST results are available for this feature:
BLAST of CX291499 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt) Total hits: 63
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Sequences
The
following sequences are available for this feature:
EST sequence >CX291499 ID=CX291499; Name=CX291499; organism=Citrus clementina; type=EST; length=613bpback to top |