CX291508

Overview
NameCX291508
Unique NameCX291508
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length701
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291508 vs. ExPASy Swiss-Prot
Match: 6PGL_RHIME (6-phosphogluconolactonase OS=Rhizobium meliloti GN=pgl PE=3 SV=2)

HSP 1 Score: 71.633 bits (174), Expect = 4.479e-12
Identity = 51/169 (30.18%), Postives = 79/169 (46.75%), Query Frame = 3
Query:   24 IDWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVT----FIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDL 518
            +DW+K  V  VDER VP ++D SN++L  D  L         V     A +AE AA            +     +A+ G P  D+++LGMG DGH AS FPG   L+E     T       ++      R+TFTF  +  + Y+ + + G+GK   +  A  +   +++
Sbjct:   58 LDWSKVTVTLVDERFVPPENDRSNHRLVADNLLKDGAAEARFVPLYQAAETAEAAA------------AIASGRTASLGAP-LDVVVLGMGTDGHTASFFPGGTRLEEALDPTTPRGVITMEAEGAGEPRLTFTFSSLQDAGYLVLHIEGSGKKEVLAQAEASGDEAEM 213          
BLAST of CX291508 vs. ExPASy Swiss-Prot
Match: 6PGL_HAEIN (6-phosphogluconolactonase OS=Haemophilus influenzae GN=pgl PE=3 SV=2)

HSP 1 Score: 70.8626 bits (172), Expect = 7.639e-12
Identity = 53/195 (27.18%), Postives = 83/195 (42.56%), Query Frame = 3
Query:    9 PYVDSIDWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQMASAEEEFT-WFLDKDATSKL 590
            PY + I+W   H +W D+R+VP    +SNY          + I   N++ I          + +E  L  +  + +           FD ++LGMG DGH ASLFP H    ++E  +  I   P+    RI+ T  +I  +  I  +V G  K+  ++        +   P     A+   T W+LDK A   L
Sbjct:   51 PYAEQINWKNLHFWWGDDRMVPPSDPESNYGEVQKLLFDHIQIPAENIHRIRGENEPHFELKRFEEELSAVIPNGV-----------FDWIILGMGIDGHTASLFP-HQTNFDDEN-LAVIAKHPESGQIRISKTAKLIEQAKRITYLVTGESKADILKEIQTTPAENLPYPAAKIKAKNGVTEWYLDKAAVRLL 232          
BLAST of CX291508 vs. ExPASy Swiss-Prot
Match: 6PGL_CHLMU (6-phosphogluconolactonase OS=Chlamydia muridarum GN=pgl PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.702e-11
Identity = 52/184 (28.26%), Postives = 82/184 (44.57%), Query Frame = 3
Query:   27 DWAKWHVFWVDERVVPKDHDDSNYKLAYDGFLSKVPITTGNVYAINDALSAEGAAEDYETCLKHLTKSNILATSAATGFPKFDLMLLGMGPDGHIASLFPGHPLLKENEKWVTFIKDSPKPPPERITFTFPVINSSAYIAMVVCGAGKSSAVQTALGNNQNSDLLPVQ-MASAEEEFTWFLDKD 575
            D +K  VFW DER        SNY  A D  L  + I    ++ + D  + +G  E YE  ++      I           FD+++LG+G DGH  SLFPG   L+E ++ V F  + P+    R+T TFP++  + ++   + G  K       L +    D  P++ + +      W L  D
Sbjct:   70 DCSKIFVFWGDERASEDTEAGSNYLKAMD-ILKWLRIPDTQIFRM-DTANPKGD-EIYENLIREHVPDTI-----------FDMVMLGVGEDGHTLSLFPGTAALEEKDRLVVF-NEVPQLQTRRMTLTFPIVRQARHLVAYIQGTAKQDLCHKLL-HPLGRDTFPIERVGTPLNPLQWVLSSD 237          
The following BLAST results are available for this feature:
BLAST of CX291508 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 43
Match NameE-valueIdentityDescription
6PGL_RHIME4.479e-1230.186-phosphogluconolactonase OS=Rhizobium meliloti GN... [more]
6PGL_HAEIN7.639e-1227.186-phosphogluconolactonase OS=Haemophilus influenza... [more]
6PGL_CHLMU1.702e-1128.266-phosphogluconolactonase OS=Chlamydia muridarum G... [more]

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Properties
Property NameValue
Genbank descriptionC03010A07SK OF2 Citrus clementina cDNA clone C03010A07, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291508 ID=CX291508; Name=CX291508; organism=Citrus clementina; type=EST; length=701bp
TGGAACCCCCGTATGTAGATTCAATTGACTGGGCGAAATGGCATGTGTTT
TGGGTTGATGAAAGAGTTGTTCCCAAGGATCATGATGATAGCAATTATAA
GCTTGCTTATGATGGTTTCCTTTCTAAGGTACCAATTACCACTGGCAATG
TCTATGCCATCAATGATGCATTATCTGCTGAAGGTGCAGCTGAAGATTAT
GAGACTTGTCTCAAGCATTTGACAAAGAGCAATATATTAGCTACATCTGC
TGCTACTGGTTTTCCAAAGTTTGATCTCATGCTTCTGGGTATGGGTCCAG
ATGGACATATAGCTTCTCTGTTTCCAGGGCATCCTCTTCTCAAGGAGAAT
GAAAAATGGGTTACTTTCATTAAAGACTCGCCAAAGCCACCTCCAGAGAG
AATCACTTTCACCTTCCCTGTAATCAACTCATCTGCATATATTGCAATGG
TGGTGTGTGGTGCTGGAAAATCAAGTGCAGTTCAAACTGCATTGGGTAAT
AATCAAAACTCTGATTTGCTGCCAGTTCAAATGGCATCGGCTGAAGAAGA
ATTTACTTGGTTTCTTGACAAAGACGCGACTTCAAAGCTGTAAGAGTCGG
AACAATTAGCTGTATGCGTGAATCCCTGTTATCTGCTATGATAATTGGTT
TGATCTGTGTGGTTTGACTACTAGTACTGCTGGATTTTGTTAGTAATGAG
A
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