CX291513

Overview
NameCX291513
Unique NameCX291513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF12_CAEEL (ADP-ribosylation factor 1-like 2 OS=Caenorhabditis elegans GN=arf-1.2 PE=1 SV=2)

HSP 1 Score: 218.009 bits (554), Expect = 3.902e-56
Identity = 102/179 (56.98%), Postives = 133/179 (74.30%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG +F  +F  LFG +E RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D +R+  A+           L+ AV L+FANKQDLP A++ A V++ L LH ++NR W I  TCA  G+GL+EG+DWLSN LK+
Sbjct:    1 MGNVFGSLFKGLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVGEAREELMRMLAEDELRDAVLLVFANKQDLPQAMNAAEVTDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSNQLKN 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF2_ORYSJ (ADP-ribosylation factor 2 OS=Oryza sativa subsp. japonica GN=ARF PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.096e-56
Identity = 100/177 (56.50%), Postives = 132/177 (74.58%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 630
            MG+ F+++FS LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D +R+  A+           L+ AV L+FANKQDLP A++ A +++ L LH ++ R W I  TCA  GEGL+EG+DWLSN +
Sbjct:    1 MGLTFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNI 177          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF1_SCHPO (ADP-ribosylation factor 1 OS=Schizosaccharomyces pombe GN=arf1 PE=2 SV=2)

HSP 1 Score: 217.624 bits (553), Expect = 5.096e-56
Identity = 100/179 (55.87%), Postives = 134/179 (74.86%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG+  S++F SLFG +E RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D +RI  A            L+ A+ L+FANKQDLP A++ A +++ L LH +++RQW I  TCA  G+GL+EG++WLS  LK+
Sbjct:    1 MGLSISKLFQSLFGKREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYRNISFTVWDVGGQDKIRPLWRHYFQNTQGIIFVVDSNDRERISEAHEELQRMLNEDELRDALLLVFANKQDLPNAMNAAEITDKLGLHSLRHRQWYIQATCATSGDGLYEGLEWLSTNLKN 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF1_CHLRE (ADP-ribosylation factor 1 OS=Chlamydomonas reinhardtii GN=ARF1 PE=2 SV=2)

HSP 1 Score: 217.238 bits (552), Expect = 6.655e-56
Identity = 101/177 (57.06%), Postives = 131/177 (74.01%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 630
            MG+ F++  S LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D +R+  A+           L+ AV L+FANKQDLP A++ A +++ L LH ++ R W I  TCA  GEGL+EG+DWLSN L
Sbjct:    1 MGLRFTKALSRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNL 177          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF1_SALBA (ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 PE=2 SV=3)

HSP 1 Score: 216.853 bits (551), Expect = 8.692e-56
Identity = 100/179 (55.87%), Postives = 131/179 (73.18%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG+ F+++   LF  KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D DR+  A+           L+ AV L+FANKQDLP A++ A +++ L LH ++ R W I  TCA  GEGL+EG+DWLSN + S
Sbjct:    1 MGLSFTKLLGRLFSKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVGEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNISS 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF_DUGJA (ADP-ribosylation factor OS=Dugesia japonica PE=2 SV=3)

HSP 1 Score: 216.468 bits (550), Expect = 1.135e-55
Identity = 100/179 (55.87%), Postives = 132/179 (73.74%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG + + +   LFG KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D +R+  A+           L+ AV L+FANKQDLP A++ A +++ L LH ++NR W I  TCA  G+GL+EG+DWLS TLK+
Sbjct:    1 MGNLVTHLLDRLFGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLNEDELRDAVLLVFANKQDLPNAMNPAEITDKLGLHSLRNRSWYIQATCATSGDGLYEGLDWLSTTLKN 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF_CANAL (ADP-ribosylation factor OS=Candida albicans GN=ARF1 PE=3 SV=4)

HSP 1 Score: 216.468 bits (550), Expect = 1.135e-55
Identity = 101/175 (57.71%), Postives = 130/175 (74.29%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSN 624
            MG+  S++F+SL G +E RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D DRI  A+           LK AV L+ ANKQDLP A++ A ++E + LH I NR W I  TCA  G+GL+EG++WLSN
Sbjct:    1 MGLTISKLFASLLGRREMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRYYFQNTQGIIFVVDSNDRDRINEAREELQSMLNEDELKDAVLLVLANKQDLPNAMNAAEITEKMGLHSIMNRPWFIQATCATTGDGLYEGLEWLSN 175          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL1_CAEEL (ADP-ribosylation factor-like protein 1 OS=Caenorhabditis elegans GN=arl-1 PE=2 SV=2)

HSP 1 Score: 215.698 bits (548), Expect = 1.936e-55
Identity = 105/170 (61.76%), Postives = 127/170 (74.71%), Query Frame = 1
Query:  124 FSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 633
            F  LFG +E RIL+LGLD AGKTTILYRLQ+GEVV+TIPTIGFNVE V+Y N+KFQVWDLGGQTSIRPYWRCY+ NT+A+IYVVDS+D DR+  ++           L+GAV  + ANKQD+ G L +  V +AL L  ++NR   IFKT A KGEGL   MDWL+N L+
Sbjct:    8 FRGLFGAREMRILILGLDGAGKTTILYRLQVGEVVTTIPTIGFNVEQVEYKNLKFQVWDLGGQTSIRPYWRCYYANTDAIIYVVDSADRDRVGISRQELATMLQEDELQGAVLAVLANKQDIAGCLTETEVYKALGLDALRNRTIQIFKTSASKGEGLDPAMDWLANQLQ 177          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF3_TAKRU (ADP-ribosylation factor 3 OS=Takifugu rubripes GN=arf3 PE=3 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.314e-55
Identity = 99/179 (55.31%), Postives = 132/179 (73.74%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG +F  +  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D +R+  A+           L+ AV L+FANKQDLP A++ A +++ L LH +++R W I  TCA  G+GL+EG+DWL+N LK+
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKN 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF3_RAT (ADP-ribosylation factor 3 OS=Rattus norvegicus GN=Arf3 PE=2 SV=2)

HSP 1 Score: 214.542 bits (545), Expect = 4.314e-55
Identity = 99/179 (55.31%), Postives = 132/179 (73.74%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG +F  +  SL G KE RIL++GLD AGKTTILY+L++GE+V+TIPTIGFNVETV+Y NI F VWD+GGQ  IRP WR YF NT+ +I+VVDS+D +R+  A+           L+ AV L+FANKQDLP A++ A +++ L LH +++R W I  TCA  G+GL+EG+DWL+N LK+
Sbjct:    1 MGNIFGNLLKSLIGKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRERVNEAREELMRMLAEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRHRNWYIQATCATSGDGLYEGLDWLANQLKN 179          
The following BLAST results are available for this feature:
BLAST of CX291513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF12_CAEEL3.902e-5656.98ADP-ribosylation factor 1-like 2 OS=Caenorhabditis... [more]
ARF2_ORYSJ5.096e-5656.50ADP-ribosylation factor 2 OS=Oryza sativa subsp. j... [more]
ARF1_SCHPO5.096e-5655.87ADP-ribosylation factor 1 OS=Schizosaccharomyces p... [more]
ARF1_CHLRE6.655e-5657.06ADP-ribosylation factor 1 OS=Chlamydomonas reinhar... [more]
ARF1_SALBA8.692e-5655.87ADP-ribosylation factor 1 OS=Salix bakko GN=ARF1 P... [more]
ARF_DUGJA1.135e-5555.87ADP-ribosylation factor OS=Dugesia japonica PE=2 S... [more]
ARF_CANAL1.135e-5557.71ADP-ribosylation factor OS=Candida albicans GN=ARF... [more]
ARL1_CAEEL1.936e-5561.76ADP-ribosylation factor-like protein 1 OS=Caenorha... [more]
ARF3_TAKRU4.314e-5555.31ADP-ribosylation factor 3 OS=Takifugu rubripes GN=... [more]
ARF3_RAT4.314e-5555.31ADP-ribosylation factor 3 OS=Rattus norvegicus GN=... [more]

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Properties
Property NameValue
Genbank descriptionC03010B01SK OF2 Citrus clementina cDNA clone C03010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291513 ID=CX291513; Name=CX291513; organism=Citrus clementina; type=EST; length=703bp
AGCAGTTTTTTCGAGTGAGCTGTTACGAAAGTTAATCGACCATCGATTAG
GAGGAGCAATATCCCCAGCGATTGACAGCTACAAAATCAGAACAAAAAAA
TGGGCATAATGTTTAGTAGAATGTTCTCTTCTCTCTTCGGCAACAAAGAA
GCTCGAATCCTGGTACTCGGTCTCGACAATGCCGGCAAAACCACAATCCT
CTATCGGCTACAAATGGGAGAAGTAGTGTCCACAATACCAACAATTGGGT
TTAACGTTGAAACGGTACAGTACAACAACATCAAGTTCCAAGTTTGGGAT
TTAGGTGGGCAAACAAGCATAAGGCCATACTGGAGATGCTATTTCCCAAA
TACTGAAGCTGTGATATATGTTGTTGATTCAAGTGACACTGATAGAATTC
AAACAGCCAAAGAGGAATTTCATGCAATTTTAGAGGAGGAAGAGCTGAAA
GGTGCAGTTGCCCTCATTTTCGCTAACAAGCAGGACCTCCCTGGTGCACT
TGATGATGCTGCTGTGTCTGAGGCCTTGGAGTTGCACAAAATCAAAAACC
GCCAGTGGGCCATTTTTAAAACTTGTGCAATAAAGGGTGAAGGCCTCTTT
GAAGGCATGGACTGGTTGAGTAATACTCTCAAGTCTGGGAGGCAGTTACT
TCATTTGTGAAATTTATGGGGCAAGCATACCGTCAAGATGTCAATCTCCA
GTC
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