CX291513

Overview
NameCX291513
Unique NameCX291513
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length703
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF3_DROME (ADP-ribosylation factor 3 OS=Drosophila melanogaster GN=Arf51F PE=2 SV=3)

HSP 1 Score: 191.045 bits (484), Expect = 5.107e-48
Identity = 89/172 (51.74%), Postives = 121/172 (70.35%), Query Frame = 1
Query:  118 RMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 633
            ++ S +FGNKE RIL+LGLD AGKTTILY+L++G+ V+TIPT+GFNVETV Y N+KF VWD+GGQ  IRP WR Y+  T+ +I+VVD +D DRI  A+           ++ A+ LIFANKQDLP A+    + E L L +I++R W +  +CA  G+GL EG+ WL++  K
Sbjct:    3 KLLSKIFGNKEMRILMLGLDAAGKTTILYKLKLGQSVTTIPTVGFNVETVTYKNVKFNVWDVGGQDKIRPLWRHYYTGTQGLIFVVDCADRDRIDEARTELHRIINDREMRDAIILIFANKQDLPDAMKPHEIQEKLGLTRIRDRNWYVQPSCATSGDGLSEGLIWLTSNHK 174          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARFJ_DICDI (ADP-ribosylation factor J OS=Dictyostelium discoideum GN=arrJ PE=3 SV=1)

HSP 1 Score: 187.193 bits (474), Expect = 7.375e-47
Identity = 85/175 (48.57%), Postives = 124/175 (70.86%), Query Frame = 1
Query:  112 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            FS +FS   G KE RIL++GLD AGK+T+LY+L++G+VVSTIPTIGFNVET++Y N+   VWD+GGQ  IRP W+ Y+  + AVI+VVDS+D +R+   K           LKG   L+FANKQD+  A++ A +  +L+L+ IK+R+W +    AI+ +G++EG DW++N+L +
Sbjct:   13 FSNIFSLFEGKKETRILMIGLDGAGKSTLLYKLKLGDVVSTIPTIGFNVETIEYKNLSMTVWDVGGQHKIRPLWKHYYHGSNAVIFVVDSTDRERMDEVKEEIDNLLIQDELKGTQILVFANKQDMNNAMNTAEIVNSLDLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNN 187          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF4_ARATH (Probable ADP-ribosylation factor At2g15310 OS=Arabidopsis thaliana GN=At2g15310 PE=2 SV=3)

HSP 1 Score: 186.808 bits (473), Expect = 9.632e-47
Identity = 90/177 (50.85%), Postives = 119/177 (67.23%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTL 630
            MG  FSR+        + RIL++GLD +GKTTILY+L++GEVV+T+PTIGFN+ETV+Y  I F VWD+GGQ  IR  WR YF N + +I+VVDSSD++R+  A+           L+GA  L+FANKQD   AL  A V+  L LH +  R W I  T AI G+GL+EG++WLS T+
Sbjct:    1 MGARFSRIAKRFLPKSKVRILMVGLDGSGKTTILYKLKLGEVVTTVPTIGFNLETVEYKGINFTVWDIGGQEKIRKLWRHYFQNAQGLIFVVDSSDSERLSEARNELHRILTDNELEGACVLVFANKQDSRNALPVAEVANKLGLHSLSKRCWLIQGTSAISGQGLYEGLEWLSTTI 177          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF11_CAEEL (ADP-ribosylation factor 1-like 1 OS=Caenorhabditis elegans GN=arf-1.1 PE=3 SV=3)

HSP 1 Score: 183.341 bits (464), Expect = 1.065e-45
Identity = 89/179 (49.72%), Postives = 120/179 (67.04%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            MG+ FS++ S +F N E R L+LGLD AGKTTILY+L++ E V+TIPTIGFNVETV +  I   VWD+GGQ  IR  W+ YFPNT  +++VVDSSD +RI  AK           L  +  L+FANKQD+P A   A +++ L+L  +KNR+W I  T A  G+GL+EG+ W+   +K+
Sbjct:    1 MGLFFSKISSFMFPNIECRTLMLGLDGAGKTTILYKLKLNETVNTIPTIGFNVETVTFQKITLTVWDVGGQKKIRALWKYYFPNTTTLVFVVDSSDIERIPEAKEELFSLLAEPELADSHLLVFANKQDMPNARSPAELTQLLDLGSLKNREWFICGTNAHSGQGLYEGLMWVKKQMKT 179          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARF3_YEAST (ADP-ribosylation factor 3 OS=Saccharomyces cerevisiae GN=ARF3 PE=1 SV=2)

HSP 1 Score: 181.03 bits (458), Expect = 5.285e-45
Identity = 85/176 (48.30%), Postives = 122/176 (69.32%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHK-IKNRQWAIFKTCAIKGEGLFEGMDWLSN 624
            MG   S++   LFG+KE +IL+LGLD AGKTTILY+L++ ++ ++ PT+GFNVETV Y N+KF +WD+GGQ  +RP WR YFP T A+I+V+DSS  +R++ AK           ++  V L++ANKQDL  A+    VS+ LEL K +KN+ W +  + A+ G+GL EG+ W+SN
Sbjct:    1 MGNSISKVLGKLFGSKEMKILMLGLDKAGKTTILYKLKLNKIKTSTPTVGFNVETVTYKNVKFNMWDVGGQQRLRPLWRHYFPATTALIFVIDSSARNRMEEAKEELYSIIGEKEMENVVLLVWANKQDLKDAMKPQEVSDFLELEKNLKNQPWCVIGSNALSGQGLVEGLSWISN 176          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARFH_DICDI (ADP-ribosylation factor H OS=Dictyostelium discoideum GN=arrH PE=3 SV=1)

HSP 1 Score: 177.948 bits (450), Expect = 4.474e-44
Identity = 82/176 (46.59%), Postives = 122/176 (69.32%), Query Frame = 1
Query:  112 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKG-EGLFEGMDWLSNTLKS 636
            FS +FS   G K+ RIL++GLD AGK+T+LY+L++G++VST+PTIGFNVET++Y N+   VWD+GGQ  IR  W+ Y+  T A+I+VVDS+D +R+   K           LKG   LIFANKQD+  A++ + + ++L L+ IK+R+W +    AIK   G++EG DW++N+L +
Sbjct:   13 FSNIFSLFEGKKQTRILMIGLDGAGKSTLLYKLKLGDIVSTVPTIGFNVETIEYKNLSMTVWDVGGQYKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDTLLIQEELKGIQILIFANKQDMNNAMNTSEIVDSLNLNSIKDRKWYVQPCSAIKSPHGIYEGFDWVANSLNN 188          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARFK_DICDI (ADP-ribosylation factor K OS=Dictyostelium discoideum GN=arrK PE=3 SV=1)

HSP 1 Score: 175.252 bits (443), Expect = 2.900e-43
Identity = 80/175 (45.71%), Postives = 119/175 (68.00%), Query Frame = 1
Query:  112 FSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLKS 636
            FS +FS   G K+ RIL++GLD AGK+T+L++L++G+VV TIPTIGFNVET+ Y N+   VWD+GGQ  IR  W+ Y+  T A+I+VVDS+D +R+   K           LKG   L+ ANKQD+  A++ A +  +L L+ IK+R+W +    AI+ +G++EG DW++N+L +
Sbjct:   13 FSNIFSLFEGKKDTRILMIGLDGAGKSTLLFKLKLGDVVLTIPTIGFNVETIVYKNLSMTVWDVGGQHKIRALWKHYYHGTNAIIFVVDSTDRERMDEVKEEIDNLLIQDELKGIQILVLANKQDMNNAMNTAEIVNSLNLNSIKDRKWYVQPCSAIRSDGIYEGFDWVANSLNN 187          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL5A_MOUSE (ADP-ribosylation factor-like protein 5A OS=Mus musculus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.788e-43
Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 633
            MGI+F+R++  LF ++E +++++GLDNAGKTTILY+  M EVV T PTIG NVE +  NN +F +WD+GGQ S+RP W  Y+ NTE VI VVDS+D +RI   +           L+ A  LIFANKQD+   +  A +S+ L+L  IK+ QW I   CA+ GEGL +G++W+ + LK
Sbjct:    1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRPSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL5A_BOVIN (ADP-ribosylation factor-like protein 5A OS=Bos taurus GN=ARL5A PE=2 SV=1)

HSP 1 Score: 174.866 bits (442), Expect = 3.788e-43
Identity = 86/178 (48.31%), Postives = 120/178 (67.42%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 633
            MGI+F+R++  LF ++E +++++GLDNAGKTTILY+  M EVV T PTIG NVE +  NN +F +WD+GGQ S+R  W  Y+ NTE VI VVDS+D +RI   +           L+ A  LIFANKQD+ G +  A +S+ L+L  IK+ QW I   CA+ GEGL +G++W+ + LK
Sbjct:    1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVINNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKGCMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177          
BLAST of CX291513 vs. ExPASy Swiss-Prot
Match: ARL5A_RAT (ADP-ribosylation factor-like protein 5A OS=Rattus norvegicus GN=Arl5a PE=2 SV=1)

HSP 1 Score: 171.785 bits (434), Expect = 3.206e-42
Identity = 85/178 (47.75%), Postives = 119/178 (66.85%), Query Frame = 1
Query:  100 MGIMFSRMFSSLFGNKEARILVLGLDNAGKTTILYRLQMGEVVSTIPTIGFNVETVQYNNIKFQVWDLGGQTSIRPYWRCYFPNTEAVIYVVDSSDTDRIQTAKXXXXXXXXXXXLKGAVALIFANKQDLPGALDDAAVSEALELHKIKNRQWAIFKTCAIKGEGLFEGMDWLSNTLK 633
            MGI+F+R++  LF ++E +++++GLDNAGKTTILY+  M EVV T PTIG NVE +  NN +F +WD+GGQ S+R  W  Y+ NTE VI VVDS+D +RI   +           L+ A  LIFANKQD+   +  A +S+ L+L  IK+ QW I   CA+ GEGL +G++W+ + LK
Sbjct:    1 MGILFTRIWR-LFNHQEHKVIIVGLDNAGKTTILYQFSMNEVVHTSPTIGSNVEEIVVNNTRFLMWDIGGQESLRSSWNTYYTNTEFVIVVVDSTDRERISVTREELYKMLAHEDLRKAGLLIFANKQDVKECMTVAEISQFLKLTSIKDHQWHIQACCALTGEGLCQGLEWMMSRLK 177          
The following BLAST results are available for this feature:
BLAST of CX291513 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 215
Match NameE-valueIdentityDescription
ARF3_DROME5.107e-4851.74ADP-ribosylation factor 3 OS=Drosophila melanogast... [more]
ARFJ_DICDI7.375e-4748.57ADP-ribosylation factor J OS=Dictyostelium discoid... [more]
ARF4_ARATH9.632e-4750.85Probable ADP-ribosylation factor At2g15310 OS=Arab... [more]
ARF11_CAEEL1.065e-4549.72ADP-ribosylation factor 1-like 1 OS=Caenorhabditis... [more]
ARF3_YEAST5.285e-4548.30ADP-ribosylation factor 3 OS=Saccharomyces cerevis... [more]
ARFH_DICDI4.474e-4446.59ADP-ribosylation factor H OS=Dictyostelium discoid... [more]
ARFK_DICDI2.900e-4345.71ADP-ribosylation factor K OS=Dictyostelium discoid... [more]
ARL5A_MOUSE3.788e-4348.31ADP-ribosylation factor-like protein 5A OS=Mus mus... [more]
ARL5A_BOVIN3.788e-4348.31ADP-ribosylation factor-like protein 5A OS=Bos tau... [more]
ARL5A_RAT3.206e-4247.75ADP-ribosylation factor-like protein 5A OS=Rattus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03010B01SK OF2 Citrus clementina cDNA clone C03010B01, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291513 ID=CX291513; Name=CX291513; organism=Citrus clementina; type=EST; length=703bp
AGCAGTTTTTTCGAGTGAGCTGTTACGAAAGTTAATCGACCATCGATTAG
GAGGAGCAATATCCCCAGCGATTGACAGCTACAAAATCAGAACAAAAAAA
TGGGCATAATGTTTAGTAGAATGTTCTCTTCTCTCTTCGGCAACAAAGAA
GCTCGAATCCTGGTACTCGGTCTCGACAATGCCGGCAAAACCACAATCCT
CTATCGGCTACAAATGGGAGAAGTAGTGTCCACAATACCAACAATTGGGT
TTAACGTTGAAACGGTACAGTACAACAACATCAAGTTCCAAGTTTGGGAT
TTAGGTGGGCAAACAAGCATAAGGCCATACTGGAGATGCTATTTCCCAAA
TACTGAAGCTGTGATATATGTTGTTGATTCAAGTGACACTGATAGAATTC
AAACAGCCAAAGAGGAATTTCATGCAATTTTAGAGGAGGAAGAGCTGAAA
GGTGCAGTTGCCCTCATTTTCGCTAACAAGCAGGACCTCCCTGGTGCACT
TGATGATGCTGCTGTGTCTGAGGCCTTGGAGTTGCACAAAATCAAAAACC
GCCAGTGGGCCATTTTTAAAACTTGTGCAATAAAGGGTGAAGGCCTCTTT
GAAGGCATGGACTGGTTGAGTAATACTCTCAAGTCTGGGAGGCAGTTACT
TCATTTGTGAAATTTATGGGGCAAGCATACCGTCAAGATGTCAATCTCCA
GTC
back to top