CX291514

Overview
NameCX291514
Unique NameCX291514
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length713
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291514 vs. ExPASy Swiss-Prot
Match: MAN5_ARATH (Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis thaliana GN=MAN5 PE=2 SV=1)

HSP 1 Score: 207.994 bits (528), Expect = 4.087e-53
Identity = 96/231 (41.56%), Postives = 146/231 (63.20%), Query Frame = 1
Query:    1 HIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQDWITEMASYVKSIDGNHLLEAGLEGFYGPSSSEKQQYNPN---FQVGTDFIANNQIPSIDFATLHSYPDQWLPSSSDESQISFLNNWLYNHIQDAQDILRKPILLAEFGKS--LKTSGANQRDQLFDTVYSAIYXXXXXXXXXXXXMFWQLFTEGLDSYRDGYEVIFSENPSTATIITDQSQKLNRI 678
            ++K +LTR N+VTG+ Y+++PTI AWEL+NEPRC  D SGKT+QDWI EM  ++KSID  HLL  GLEGFYGP+S +    NP     Q+GTDF+ N+   +IDFA++H YPD W  + + E ++ F+  W+ +HI+D    L+KP+L  EFG S   K    +QRD+ +  ++  +Y            + WQLF EG++++ D + ++  E  S   ++ +QS +L ++
Sbjct:  184 YLKVLLTRKNSVTGIEYRNDPTIFAWELINEPRCTTDVSGKTLQDWIDEMTGFIKSIDDKHLLTVGLEGFYGPNSPKGLTVNPEQWASQLGTDFVQNSNSSNIDFASVHIYPDHWFHNQTFEEKLKFVVKWMQSHIEDGLKELKKPVLFTEFGLSNQNKDYEPSQRDKFYRIIFDVVYKSAKRKKSGAGTLVWQLFMEGMETFNDDFGIVPHEQDSIYKLMIEQSCRLGKV 414          
BLAST of CX291514 vs. ExPASy Swiss-Prot
Match: MANP_ARATH (Putative mannan endo-1,4-beta-mannosidase P OS=Arabidopsis thaliana GN=MANP PE=5 SV=2)

HSP 1 Score: 186.422 bits (472), Expect = 1.273e-46
Identity = 95/178 (53.37%), Postives = 116/178 (65.17%), Query Frame = 1
Query:    1 HIKTVLTRINTVTGVAYKDEPTIMAWELMNEPRCYADPSGKTIQDWITEMASYVKSIDGNHLLEAGLEGFYGPSSSE-KQQYNP--NFQVGTDFIANNQIPSIDFATLHSYPDQWLPSSSDESQISFLNNWLYNHIQDAQDILRKPILLAEFGKSLKTSGAN--QRDQLFDTVYSAIY 519
            H+KT+L R+NT T VAYKDEP  MAW+LMNEPRC  D SGKT+  WI EMA +VKS+D NHLL  G EGFYG SS E K   NP     VG DFIAN+ I +IDFA++H   D W       S+++F+  WL  HI+DAQ+ L+KP++LAEFG    T       RD +F T Y  IY
Sbjct:  156 HVKTMLNRVNTFTKVAYKDEPASMAWQLMNEPRCGVDRSGKTLMAWINEMALFVKSVDPNHLLSTGHEGFYGDSSPERKNSLNPVSANTVGADFIANHNIDAIDFASMHCGSDLWFQRLDQNSRLAFIKRWLEGHIEDAQNNLKKPVILAEFGLGSDTPRYTLANRDDVFTTTYDIIY 333          
The following BLAST results are available for this feature:
BLAST of CX291514 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 22
Match NameE-valueIdentityDescription
MAN5_ARATH4.087e-5341.56Mannan endo-1,4-beta-mannosidase 5 OS=Arabidopsis ... [more]
MANP_ARATH1.273e-4653.37Putative mannan endo-1,4-beta-mannosidase P OS=Ara... [more]

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Properties
Property NameValue
Genbank descriptionC03010B02SK OF2 Citrus clementina cDNA clone C03010B02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291514 ID=CX291514; Name=CX291514; organism=Citrus clementina; type=EST; length=713bp
CATATCAAGACTGTTCTTACGAGAATAAACACTGTGACCGGAGTTGCTTA
CAAAGATGAACCAACGATTATGGCTTGGGAGCTTATGAATGAGCCAAGAT
GTTATGCAGATCCATCGGGAAAAACCATTCAGGATTGGATTACAGAGATG
GCTTCTTATGTAAAATCAATTGATGGAAATCACTTATTAGAAGCTGGTTT
AGAAGGGTTCTATGGACCATCGTCATCTGAGAAGCAGCAATACAATCCAA
ATTTTCAAGTAGGAACAGATTTCATTGCAAACAATCAAATTCCCAGCATT
GATTTTGCTACACTTCATTCTTATCCAGATCAATGGCTTCCCAGCTCCAG
TGATGAAAGCCAAATTTCATTCTTGAACAATTGGCTCTACAATCATATCC
AAGATGCACAGGACATTCTTCGGAAGCCAATTCTCTTAGCGGAGTTTGGA
AAATCTTTGAAAACCTCTGGTGCCAACCAAAGGGACCAGCTGTTTGATAC
GGTCTACTCGGCAATTTATTCGTCAGCCAGGAGTGGCGGTGCAGCTGTTG
GTGGCATGTTCTGGCAACTTTTTACCGAAGGATTAGACTCTTACCGTGAT
GGGTATGAGGTGATCTTCAGTGAGAACCCCTCGACTGCAACCATCATCAC
TGACCAATCTCAGAAGCTCAATCGAATTCGAAAGATGTATGTCAGACTGA
GAAACGTTCAGAA
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