CX291537

Overview
NameCX291537
Unique NameCX291537
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length740
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_SHEB9 (Biotin synthase OS=Shewanella baltica (strain OS195) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 80/164 (48.78%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW +++I++++  P+ DLLF    +HR  ++  EVQ   LLSIKTG C EDC YCPQS+RYDTG++ ++L+  + V+  A+ AK AG++RFCMGAAWR+   ++ +   + + V++++ +GME C TLGML E QA +L  AGL  YNHNLDTS E Y  +I
Sbjct:    7 RHDWKREEIEALFALPMNDLLFKAHSIHREVYDPNEVQISRLLSIKTGACPEDCKYCPQSARYDTGLEKERLLAMETVLTEARSAKAAGASRFCMGAAWRNP--KEKDMPYLKQMVQEVKALGMETCMTLGMLSEDQANDLASAGLDYYNHNLDTSPEYYGDVI 168          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_SHEB8 (Biotin synthase OS=Shewanella baltica (strain OS185) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 80/164 (48.78%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW +++I++++  P+ DLLF    +HR  ++  EVQ   LLSIKTG C EDC YCPQS+RYDTG++ ++L+  + V+  A+ AK AG++RFCMGAAWR+   ++ +   + + V++++ +GME C TLGML E QA +L  AGL  YNHNLDTS E Y  +I
Sbjct:    7 RHDWKREEIEALFALPMNDLLFKAHSIHREVYDPNEVQISRLLSIKTGACPEDCKYCPQSARYDTGLEKERLLAMETVLTEARSAKAAGASRFCMGAAWRNP--KEKDMPYLKQMVQEVKALGMETCMTLGMLSEDQANDLASAGLDYYNHNLDTSPEYYGDVI 168          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_SHEB5 (Biotin synthase OS=Shewanella baltica (strain OS155 / ATCC BAA-1091) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 80/164 (48.78%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW +++I++++  P+ DLLF    +HR  ++  EVQ   LLSIKTG C EDC YCPQS+RYDTG++ ++L+  + V+  A+ AK AG++RFCMGAAWR+   ++ +   + + V++++ +GME C TLGML E QA +L  AGL  YNHNLDTS E Y  +I
Sbjct:    7 RHDWKREEIEALFALPMNDLLFKAHSIHREVYDPNEVQISRLLSIKTGACPEDCKYCPQSARYDTGLEKERLLAMETVLTEARSAKAAGASRFCMGAAWRNP--KEKDMPYLKQMVQEVKALGMETCMTLGMLSEDQANDLASAGLDYYNHNLDTSPEYYGDVI 168          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_SHEB2 (Biotin synthase OS=Shewanella baltica (strain OS223) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 80/164 (48.78%), Postives = 115/164 (70.12%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW +++I++++  P+ DLLF    +HR  ++  EVQ   LLSIKTG C EDC YCPQS+RYDTG++ ++L+  + V+  A+ AK AG++RFCMGAAWR+   ++ +   + + V++++ +GME C TLGML E QA +L  AGL  YNHNLDTS E Y  +I
Sbjct:    7 RHDWKREEIEALFALPMNDLLFKAHSIHREVYDPNEVQISRLLSIKTGACPEDCKYCPQSARYDTGLEKERLLAMETVLTEARSAKAAGASRFCMGAAWRNP--KEKDMPYLKQMVQEVKALGMETCMTLGMLSEDQANDLASAGLDYYNHNLDTSPEYYGDVI 168          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_METCA (Biotin synthase OS=Methylococcus capsulatus GN=bioB PE=3 SV=2)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 83/164 (50.61%), Postives = 113/164 (68.90%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW++ + ++++  P  +LLF    +HR   +  EVQ  +LLSIKTG CSEDC+YCPQS+ Y+TGVK + LM+ + V++AAQ+A+E G+TRFCMGAAWR    R  +   I   V+ ++ +GME C T GML + QA  LK+AGL  YNHNLDTS   Y +II
Sbjct:   13 RHDWTQGEAEALFALPFNELLFQAQTIHRRHFDPNEVQVSSLLSIKTGACSEDCAYCPQSAHYETGVKRESLMSLEDVLEAAQRAREEGATRFCMGAAWRSP--RDGDLEAIAAMVEGVKALGMETCVTAGMLSDEQARRLKEAGLDYYNHNLDTSESYYGEII 174          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_BURVG (Biotin synthase OS=Burkholderia vietnamiensis (strain G4 / LMG 22486) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.481 bits (441), Expect = 5.374e-43
Identity = 82/161 (50.93%), Postives = 113/161 (70.19%), Query Frame = 2
Query:  257 WSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            W   D+ ++++ P  DL+F   QVHR   +   VQ  TLLSIKTGGC EDC YC QSS +DTG+K +KLM  DAV++AA+ AK +G++RFCMGAAWR+   ++ +   + E V+ ++++G+E C TLGMLE+ QA +L  AGL  YNHNLDTS E Y ++I
Sbjct:   24 WRVADVVALFELPFNDLMFRAQQVHREHFDANAVQLSTLLSIKTGGCEEDCGYCSQSSHHDTGLKAEKLMDVDAVLEAARAAKASGASRFCMGAAWRNP--KERHMPALTEMVRGVKELGLETCMTLGMLEDEQAQQLAHAGLDYYNHNLDTSPEFYGQVI 182          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_XANC5 (Biotin synthase OS=Xanthomonas campestris pv. vesicatoria (strain 85-10) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 81/164 (49.39%), Postives = 114/164 (69.51%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW + ++++++D P  +LL   A VHR   +  +VQ  TLLS+KTGGC EDC+YCPQ+ RYDTGV  QKLM  + V+  A++AK AG++RFCMGAAWR    ++ +  ++   +++++ MG+E C TLGML+  QA  LK AGL  YNHNLDT+ + Y  II
Sbjct:    6 RHDWDRKELQALFDLPFPELLHRAASVHRAHFDPAQVQVSTLLSVKTGGCPEDCAYCPQAQRYDTGVSAQKLMETEEVVAKARQAKAAGASRFCMGAAWRSP--KERDIPKVAAMIREVKAMGLETCATLGMLDAGQARALKDAGLDYYNHNLDTAPDYYDSII 167          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_XANAC (Biotin synthase OS=Xanthomonas axonopodis pv. citri GN=bioB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 81/164 (49.39%), Postives = 114/164 (69.51%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW + ++++++D P  +LL   A VHR   +  +VQ  TLLS+KTGGC EDC+YCPQ+ RYDTGV  QKLM  + V+  A++AK AG++RFCMGAAWR    ++ +  ++   +++++ MG+E C TLGML+  QA  LK AGL  YNHNLDT+ + Y  II
Sbjct:    6 RHDWDRKELQALFDLPFPELLHRAASVHRAHFDPAQVQVSTLLSVKTGGCPEDCAYCPQAQRYDTGVSAQKLMETEEVVAKARQAKAAGASRFCMGAAWRSP--KERDIPKVAAMIREVKAMGLETCATLGMLDAGQARALKDAGLDYYNHNLDTAPDYYDSII 167          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_SALAR (Biotin synthase OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86 / RSK2980) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 81/161 (50.31%), Postives = 112/161 (69.57%), Query Frame = 2
Query:  257 WSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            W+   +  +++ P+L+LLF   Q+HR   + +++Q  TLLSIKTG C EDC YCPQSSRY TG++ ++LM  + V+++A+KAK AGSTRFCMGAAW++   R+ +   + + V+ ++ MG+E C TLGML E QA  L  AGL  YNHNLDTS E Y  II
Sbjct:    7 WTLSQVTELFEKPLLELLFEAQQIHRQHFDPKQIQVSTLLSIKTGACPEDCKYCPQSSRYKTGLEAERLMEVEQVLESARKAKNAGSTRFCMGAAWKNP--RERDMPYLEQIVQGVKAMGLETCMTLGMLNESQAQRLANAGLDYYNHNLDTSPEFYGNII 165          
BLAST of CX291537 vs. ExPASy Swiss-Prot
Match: BIOB_PSEA6 (Biotin synthase OS=Pseudoalteromonas atlantica (strain T6c / BAA-1087) GN=bioB PE=3 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 7.019e-43
Identity = 84/164 (51.22%), Postives = 114/164 (69.51%), Query Frame = 2
Query:  248 RHDWSKDDIKSIYDSPVLDLLFHGAQVHRHAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSRYDTGVKGQKLMTKDAVMQAAQKAKEAGSTRFCMGAAWRDTIGRKTNFNQILEYVKDIRDMGMEVCCTLGMLEEHQAIELKKAGLTAYNHNLDTSREIYAKII 739
            RHDW+  ++ +++  P  DLLF    VHR   +   VQ  TLLSIKTG C EDC YCPQS+RYDTG++ ++LM  + V+Q A++AK AGSTRFCMGAAWR+   ++ +   + + V++++ +G+E C TLGML   QAI L++AGL  YNHNLDTS E Y  II
Sbjct:   17 RHDWTLAEVNALFAMPFNDLLFKAQCVHRAHFDPNYVQVSTLLSIKTGACPEDCKYCPQSARYDTGLEKERLMEIEKVIQRAREAKAAGSTRFCMGAAWRNP--KERDMPYVTDMVREVKKLGLETCMTLGMLTREQAIALQQAGLDYYNHNLDTSPEFYGDII 178          
The following BLAST results are available for this feature:
BLAST of CX291537 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 500
Match NameE-valueIdentityDescription
BIOB_SHEB95.374e-4348.78Biotin synthase OS=Shewanella baltica (strain OS19... [more]
BIOB_SHEB85.374e-4348.78Biotin synthase OS=Shewanella baltica (strain OS18... [more]
BIOB_SHEB55.374e-4348.78Biotin synthase OS=Shewanella baltica (strain OS15... [more]
BIOB_SHEB25.374e-4348.78Biotin synthase OS=Shewanella baltica (strain OS22... [more]
BIOB_METCA5.374e-4350.61Biotin synthase OS=Methylococcus capsulatus GN=bio... [more]
BIOB_BURVG5.374e-4350.93Biotin synthase OS=Burkholderia vietnamiensis (str... [more]
BIOB_XANC57.019e-4349.39Biotin synthase OS=Xanthomonas campestris pv. vesi... [more]
BIOB_XANAC7.019e-4349.39Biotin synthase OS=Xanthomonas axonopodis pv. citr... [more]
BIOB_SALAR7.019e-4350.31Biotin synthase OS=Salmonella arizonae (strain ATC... [more]
BIOB_PSEA67.019e-4351.22Biotin synthase OS=Pseudoalteromonas atlantica (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03010D05SK OF2 Citrus clementina cDNA clone C03010D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291537 ID=CX291537; Name=CX291537; organism=Citrus clementina; type=EST; length=740bp
AACTTTTCGTATCAGATTCTTCTTTCTTCTCTCTCAATTGACACTCCTAG
TTTTCATCGCCAAAAATCAAGTGCAGCTCGAGCAACGGAAAAAAATCAAA
ATGATGTCGTTTCGGTCGTTACTGCGTTCGCAACGTAGTTTAAGTTTAAG
ACCCTCAAAGAAATTTTTGGCATTGCATTCTTCTTGCTCGTGTTACTCAG
CCTCGGCTGCTGCCATTGAAGCTGAAAGAACAATACGTGAAGGTCCCAGA
CACGATTGGTCTAAAGATGACATCAAATCTATCTACGACTCTCCTGTTCT
CGATCTCCTCTTCCATGGAGCTCAAGTTCACAGACATGCTCATAACTTCA
GGGAAGTGCAGCAGTGCACTCTCCTCTCCATCAAGACAGGTGGATGCAGT
GAGGATTGTTCATATTGTCCTCAATCCTCTAGATATGACACTGGAGTGAA
GGGCCAAAAGCTTATGACTAAAGACGCCGTGATGCAGGCAGCACAAAAGG
CAAAGGAGGCCGGAAGTACACGATTTTGTATGGGTGCTGCATGGAGAGAC
ACAATCGGGAGGAAAACCAATTTCAACCAAATACTTGAATACGTGAAAGA
TATAAGGGACATGGGAATGGAGGTTTGCTGCACCTTGGGCATGCTGGAAG
AGCATCAGGCTATAGAACTCAAGAAAGCAGGCCTTACAGCATACAACCAT
AACCTTGATACCTCAAGAGAAATTTACGCGAAAATCATTA
back to top