CX291588

Overview
NameCX291588
Unique NameCX291588
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length682
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_CEPAC (Orotidine 5'-phosphate decarboxylase OS=Cephalosporium acremonium GN=PYR4 PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 9.435e-28
Identity = 64/128 (50.00%), Postives = 86/128 (67.19%), Query Frame = 1
Query:    7 YEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIV 378
            Y  RA  + +     L+++M  K SNLCL+ADVA A ELL +A+KVGP I +LKTH D++   DFTP+ G+  +L  +A KH FLIFEDRKF DIGNTV +Q   G  RI++WA I+N +++ G   V
Sbjct:   11 YSTRAETVTHPLSAYLYKLMDLKASNLCLSADVANARELLHVADKVGPSIVVLKTHYDMVAGWDFTPETGTGARLAKLARKHGFLIFEDRKFGDIGNTVELQYTQGAARIIEWAHIVNVNMVPGKASV 138          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_TRIAT (Orotidine 5'-phosphate decarboxylase OS=Trichoderma atroviride GN=pyr4 PE=3 SV=1)

HSP 1 Score: 118.242 bits (295), Expect = 3.964e-26
Identity = 61/113 (53.98%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   52 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIV 378
            L ++M  K SNLCL+ADV TA ELL +A+K+GP I +LKTH D++   DF PD G+  KL ++A KH FLIFEDRKF DIG+TV +Q   G  RI+DWA I+N +++ G   V
Sbjct:   26 LLRLMDLKASNLCLSADVPTARELLYLADKIGPSIVVLKTHYDMVSGWDFHPDTGTGAKLASLARKHGFLIFEDRKFGDIGHTVELQYTSGSARIIDWAHIVNVNMVPGKASV 138          

HSP 2 Score: 67.781 bits (164), Expect = 6.144e-11
Identity = 40/94 (42.55%), Postives = 50/94 (53.19%), Query Frame = 1
Query:  430 AEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVK-----------GGDDLGQQYNTPYSVIYDRGSDI 678
            A+MSS GN   G+YT A V+ A +H DFV+GFIS    +      +  FI  TPG Q+             GGD  GQQYNT + +I   GSDI
Sbjct:  255 AQMSSEGNFMTGEYTQACVEAAREHKDFVMGFISQEALN---TQADDDFIHMTPGCQLPPEDEDQQTNGKVGGDGQGQQYNTAHKIIGIAGSDI 345          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_TRIRE (Orotidine 5'-phosphate decarboxylase OS=Trichoderma reesei GN=ura3 PE=3 SV=1)

HSP 1 Score: 117.857 bits (294), Expect = 5.177e-26
Identity = 59/113 (52.21%), Postives = 80/113 (70.80%), Query Frame = 1
Query:   52 LFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILPDFTPD----FGSKLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIV 378
            LF++M  K SNLCL+ADV TA ELL +A+K+GP I +LKTH D++  +T       G++L ++A KH FLIFEDRKF DIG+TV +Q  GG  RI+DWA I+N +++ G   V
Sbjct:   26 LFKLMDLKASNLCLSADVPTARELLYLADKIGPSIVVLKTHYDMVSGWTSHPETGTGAQLASLARKHGFLIFEDRKFGDIGHTVELQYTGGSARIIDWAHIVNVNMVPGKASV 138          

HSP 2 Score: 69.3218 bits (168), Expect = 2.112e-11
Identity = 41/94 (43.62%), Postives = 52/94 (55.32%), Query Frame = 1
Query:  430 AEMSSAGNLAKGDYTAAAVKIAEDHSDFVIGFISVNPASWPGAPVNPAFIQATPGVQMVK-----------GGDDLGQQYNTPYSVIYDRGSDI 678
            A+MSS GN    +YT A+V+ A +H DFV+GFIS    +      + AFI  TPG Q+             GGD  GQQYNTP+ +I   GSDI
Sbjct:  257 AQMSSQGNFMNKEYTQASVEAAREHKDFVMGFISQETLN---TEPDDAFIHMTPGCQLPPEDEDQQTNGSVGGDGQGQQYNTPHKLIGIAGSDI 347          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_NEUCR (Orotidine 5'-phosphate decarboxylase OS=Neurospora crassa GN=pyr-4 PE=3 SV=1)

HSP 1 Score: 114.775 bits (286), Expect = 4.383e-25
Identity = 63/128 (49.22%), Postives = 83/128 (64.84%), Query Frame = 1
Query:    7 YEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIV 378
            + ER     +     LF++M  K+SNLCL+ADV  A +LL +A+KVGP I +LKTH D++   D+ P  G+  KL A+A KH FLIFEDRKF DIG+TV  Q   G  RI++WA I NA I +G  +V
Sbjct:   17 FAERVESSTHPLTSYLFRLMEVKQSNLCLSADVEHARDLLALADKVGPSIVVLKTHYDLITGWDYHPHTGTGAKLAALARKHGFLIFEDRKFVDIGSTVQKQYTAGTARIVEWAHITNADIHAGEAMV 144          
BLAST of CX291588 vs. ExPASy Swiss-Prot
Match: PYRF_SORMA (Orotidine 5'-phosphate decarboxylase OS=Sordaria macrospora GN=URA3 PE=3 SV=1)

HSP 1 Score: 113.62 bits (283), Expect = 9.763e-25
Identity = 62/128 (48.44%), Postives = 82/128 (64.06%), Query Frame = 1
Query:    7 YEERANLMKNETGRKLFQVMVKKESNLCLAADVATAAELLQIAEKVGPEICLLKTHVDILP--DFTPDFGS--KLRAIAEKHNFLIFEDRKFADIGNTVTMQAEGGIFRILDWADIINAHIISGPGIV 378
            + ER     +     LF++M  K+SNLCL+ DV  A ELL +A+K+GP I +LKTH D++   D+ P  G+  KL A+A KH FLIFEDRKF DIG+TV  Q   G  RI++WA I NA I +G  +V
Sbjct:   15 FAERVESSSHPLTSYLFRLMEVKQSNLCLSDDVEHARELLALADKIGPSIVVLKTHYDLITGWDYHPHTGTGAKLAALARKHGFLIFEDRKFVDIGSTVQKQYTAGTARIVEWAHITNADIHAGEAMV 142          
The following BLAST results are available for this feature:
BLAST of CX291588 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 65
Match NameE-valueIdentityDescription
PYRF_CEPAC9.435e-2850.00Orotidine 5'-phosphate decarboxylase OS=Cephalospo... [more]
PYRF_TRIAT3.964e-2653.98Orotidine 5'-phosphate decarboxylase OS=Trichoderm... [more]
PYRF_TRIRE5.177e-2652.21Orotidine 5'-phosphate decarboxylase OS=Trichoderm... [more]
PYRF_NEUCR4.383e-2549.22Orotidine 5'-phosphate decarboxylase OS=Neurospora... [more]
PYRF_SORMA9.763e-2548.44Orotidine 5'-phosphate decarboxylase OS=Sordaria m... [more]

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Properties
Property NameValue
Genbank descriptionC03011A06SK OF2 Citrus clementina cDNA clone C03011A06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291588 ID=CX291588; Name=CX291588; organism=Citrus clementina; type=EST; length=682bp
TTGAAGTACGAAGAGAGGGCGAATTTGATGAAGAATGAGACTGGGAGAAA
ATTGTTTCAAGTGATGGTGAAGAAGGAGAGTAATTTGTGTTTGGCTGCTG
ATGTTGCCACTGCTGCTGAGTTGCTTCAAATTGCCGAGAAGGTTGGACCA
GAGATCTGCTTGTTGAAAACCCATGTCGATATATTGCCTGATTTCACCCC
AGATTTTGGTTCCAAACTTCGTGCGATTGCAGAAAAGCATAACTTCCTAA
TTTTTGAAGATCGCAAGTTTGCGGACATTGGTAACACTGTGACCATGCAG
GCTGAAGGTGGTATATTTCGTATATTGGATTGGGCCGATATAATAAATGC
TCACATAATCTCTGGACCGGGAATTGTGGATGGTCTGAAATTAAAGGGAT
TGCCTCGTGGTAGGGGTCTGTTGCTACTGGCTGAGATGAGCTCAGCTGGT
AACCTAGCAAAGGGAGACTATACAGCAGCAGCTGTGAAAATTGCCGAGGA
TCATTCTGATTTTGTCATTGGATTCATCTCAGTTAATCCAGCATCATGGC
CAGGGGCACCAGTCAATCCAGCCTTTATTCAAGCAACCCCTGGAGTTCAA
ATGGTAAAGGGAGGTGATGATCTAGGCCAACAATATAACACTCCATACTC
GGTCATCTACGATAGGGGTAGTGACATAATTA
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