CX291621

Overview
NameCX291621
Unique NameCX291621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_CHICK (60S ribosomal protein L5 OS=Gallus gallus GN=RPL5 PE=2 SV=2)

HSP 1 Score: 204.142 bits (518), Expect = 6.189e-52
Identity = 107/221 (48.42%), Postives = 143/221 (64.71%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER----LNAPHSAVD 649
            AAYAHELP+ G++VGLTNYAAAYCTGLLLARR+L    +D  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  I  DG+E +YKK HAAIR +P  +K  K   K+ KR N  K++  ++K ++ ++    L A   A D
Sbjct:   77 AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNKFGLDKIYEGQVEVTGDEYNVESVDGKPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNITPDGMEEMYKKAHAAIRDNPVHEKKPKREVKK-KRVNSTKMSLAQKKDRVAQKKASFLRAQERAAD 296          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_HUMAN (60S ribosomal protein L5 OS=Homo sapiens GN=RPL5 PE=1 SV=3)

HSP 1 Score: 202.601 bits (514), Expect = 1.801e-51
Identity = 102/208 (49.04%), Postives = 139/208 (66.83%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 622
            AAYAHELP+ G++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   77 AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_MACFA (60S ribosomal protein L5 OS=Macaca fascicularis GN=RPL5 PE=2 SV=3)

HSP 1 Score: 201.06 bits (510), Expect = 5.240e-51
Identity = 101/208 (48.56%), Postives = 139/208 (66.83%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 622
            AAYAH+LP+ G++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   77 AAYAHKLPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNSVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_BOVIN (60S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=2 SV=3)

HSP 1 Score: 200.675 bits (509), Expect = 6.843e-51
Identity = 101/208 (48.56%), Postives = 138/208 (66.35%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 622
            AAYAHELP+ G++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE TG++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+  AEVHRK+I G +VA YM  L+E++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   77 AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVTGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFSAEVHRKHIMGQNVADYMRYLIEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKKEVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_RAT (60S ribosomal protein L5 OS=Rattus norvegicus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 200.29 bits (508), Expect = 8.938e-51
Identity = 101/208 (48.56%), Postives = 138/208 (66.35%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 622
            AAYAHELP+ G++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G++Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   77 AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGDEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_MOUSE (60S ribosomal protein L5 OS=Mus musculus GN=Rpl5 PE=1 SV=3)

HSP 1 Score: 198.749 bits (504), Expect = 2.600e-50
Identity = 101/208 (48.56%), Postives = 137/208 (65.87%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTRR-PFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVER 622
            AAYAHELP+ G++VGLTNYAAAYCTGLLLARR+L    MD  YEG VE  G +Y+VE  D +   F   LD GL +TTTGN+VF            IPHS KRF G+  + K+ +AEVHRK+I G +VA YM  LME++ + Y+  F++YIK  +  D +E +YKK HAAIR +P  +K  K   K+ KR+N  K++  ++K ++ ++
Sbjct:   77 AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMDKIYEGQVEVNGGEYNVESIDGQPGAFTCYLDAGLARTTTGNKVFGALKGAVDGGLSIPHSTKRFPGYDSESKEFNAEVHRKHIMGQNVADYMRYLMEEDEDAYKKQFSQYIKNNVTPDMMEEMYKKAHAAIRENPVYEKKPKREVKK-KRWNRPKMSLAQKKDRVAQK 283          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_ANOGA (60S ribosomal protein L5 OS=Anopheles gambiae GN=RpL5 PE=2 SV=3)

HSP 1 Score: 192.586 bits (488), Expect = 1.864e-48
Identity = 99/214 (46.26%), Postives = 135/214 (63.08%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHS 640
            AAY+HELPR G++VGLTNYAAAYCTGLL+ARR+L+ L +D  Y G  + TGE+Y VEP D     FR  LDVGL +TTTG RVF            IPHS KRF G+S + K  +AE+HR +I+G HVA YM TL E++ E ++  F++YI  GI AD +E +YK  HA+IR  P+ +   + +P+   R+   +     R+++     + P S
Sbjct:   77 AAYSHELPRYGVKVGLTNYAAAYCTGLLVARRILQKLRLDTLYAGCTDVTGEEYLVEPVDEGPAAFRCYLDVGLARTTTGARVFGAMKGAVDGGLNIPHSVKRFPGYSAENKSFNAEMHRDHIFGLHVANYMRTLEEEDEEAFKRQFSKYISLGIKADDIENIYKNAHASIRIPPSRRNPRRRSPRSGGRWPSCRSPPARRRSRSTRPTSWPRS 290          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_OIKDI (60S ribosomal protein L5 OS=Oikopleura dioica GN=RPL5 PE=3 SV=1)

HSP 1 Score: 191.43 bits (485), Expect = 4.152e-48
Identity = 101/208 (48.56%), Postives = 138/208 (66.35%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMK-KSEKPAPKEHKRYNLKKLTYEERKAKLVE 619
            +AYAHELPR G+ VGLTNY+AAY TGLL+ RRVL+   +D  YEG +E  G+++  E  A  +  FR  LD GL +T+TG R+F            IPHS KRF GF+ DGK L+AE H+ +I+GGHV  YM  L E+  E Y+  F+ +IK GI+++ +E +YKK HAAIRADP+ K K EK   K  KR+N  K++Y +R+A++ +
Sbjct:   87 SAYAHELPRYGVSVGLTNYSAAYATGLLIGRRVLQKFGLDSMYEGQIEVDGDEFYEEADAAEKASFRCYLDTGLARTSTGARIFGVLKGCADAGIDIPHSPKRFPGFA-DGK-LNAEAHKDHIFGGHVGDYMEKLEEENEEAYKRQFSRFIKNGINSENIEEMYKKAHAAIRADPSPKAKVEKTVDK--KRWNRAKISYAQRRARVAQ 290          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_YEAST (60S ribosomal protein L5 OS=Saccharomyces cerevisiae GN=RPL5 PE=1 SV=3)

HSP 1 Score: 185.267 bits (469), Expect = 2.975e-46
Identity = 98/216 (45.37%), Postives = 132/216 (61.11%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEH-----KRYNLKKLTYEERKAKLVERLNA 631
            AAY+HELPR G+  GLTN+AAAY TGLL+ARR L+ L +D+ Y+G  E  GE    E   D  RPF+  LD+GL +TTTG RVF            +PHS+ RF G+  + +++D E+ R YI+GGHV+ YM  L +D+ E++   F  Y+   IDAD LE +Y   H AIRADP  K +EK   KE      K+Y   KL+ EER A++  ++ A
Sbjct:   77 AAYSHELPRYGITHGLTNWAAAYATGLLIARRTLQRLGLDETYKGVEEVEGEYELTEAVEDGPRPFKVFLDIGLQRTTTGARVFGALKGASDGGLYVPHSENRFPGWDFETEEIDPELLRSYIFGGHVSQYMEELADDDEERFSELFKGYLADDIDADSLEDIYTSAHEAIRADPAFKPTEKKFTKEQYAAESKKYRQTKLSKEERAARVAAKIAA 292          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_DICDI (60S ribosomal protein L5 OS=Dictyostelium discoideum GN=rpl5 PE=1 SV=1)

HSP 1 Score: 182.185 bits (461), Expect = 2.519e-45
Identity = 91/205 (44.39%), Postives = 134/205 (65.37%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADTR-RPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKL 613
            AAYAHELPR G++VGLTNYA+ Y TGLLLARR+L  L++ D Y+G  +  G+ + V+P D + RPF+A LDVGL +T+TG +VF            +PH + RFAG++ + K+L+AE  R YI+G HVA+YM+ L  ++ + Y+  F++YIK G+    +E +Y   H AIRA+P        + K+ K  NL K T +++KA++
Sbjct:   77 AAYAHELPRFGVKVGLTNYASCYATGLLLARRLLAKLKLADLYKGAEKVDGKVFLVKPVDDKPRPFKANLDVGLARTSTGAKVFAVLKGAVDGGIYVPHGETRFAGYNAESKKLNAETLRGYIFGKHVASYMTLLQTEDEDAYKKIFSQYIKNGVAPKDIETIYANAHKAIRANPAPAAKSTKSYKDIKSKNLSKRTLKQKKARV 281          
The following BLAST results are available for this feature:
BLAST of CX291621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_CHICK6.189e-5248.4260S ribosomal protein L5 OS=Gallus gallus GN=RPL5 ... [more]
RL5_HUMAN1.801e-5149.0460S ribosomal protein L5 OS=Homo sapiens GN=RPL5 P... [more]
RL5_MACFA5.240e-5148.5660S ribosomal protein L5 OS=Macaca fascicularis GN... [more]
RL5_BOVIN6.843e-5148.5660S ribosomal protein L5 OS=Bos taurus GN=RPL5 PE=... [more]
RL5_RAT8.938e-5148.5660S ribosomal protein L5 OS=Rattus norvegicus GN=R... [more]
RL5_MOUSE2.600e-5048.5660S ribosomal protein L5 OS=Mus musculus GN=Rpl5 P... [more]
RL5_ANOGA1.864e-4846.2660S ribosomal protein L5 OS=Anopheles gambiae GN=R... [more]
RL5_OIKDI4.152e-4848.5660S ribosomal protein L5 OS=Oikopleura dioica GN=R... [more]
RL5_YEAST2.975e-4645.3760S ribosomal protein L5 OS=Saccharomyces cerevisi... [more]
RL5_DICDI2.519e-4544.3960S ribosomal protein L5 OS=Dictyostelium discoide... [more]

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Properties
Property NameValue
Genbank descriptionC03011D05SK OF2 Citrus clementina cDNA clone C03011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291621 ID=CX291621; Name=CX291621; organism=Citrus clementina; type=EST; length=732bp
TGCTGCTTATGCCCATGAGCTTCCTCGTTCTGGACTTGAAGTAGGTCTTA
CAAACTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTC
TTGAAGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTAC
TGGAGAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTG
CTCTCCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTT
GGTGCTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGA
CAAGAGGTTTGCTGGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGG
TTCACCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACA
TTGATGGAAGATGAGCCAGAGAAGTATCAATCTCACTTCACTGAGTACAT
CAAGAAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTC
ATGCTGCCATTCGTGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCT
CCCAAAGAACATAAGAGGTATAATTTGAAGAAGCTTACTTACGAGGAAAG
GAAGGCGAAGCTGGTTGAAAGGCTGAATGCCCCTCACTCGGCAGTTGATG
AGGACGACGAATGAAAGCAGCATAACTAGATATGAATTCAAATATGTGGC
AGATCTGCAGTACACATTTGTTGTTGCAGTTC
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