CX291621

Overview
NameCX291621
Unique NameCX291621
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length732
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_THEPA (60S ribosomal protein L5 OS=Theileria parva GN=RPL5 PE=3 SV=1)

HSP 1 Score: 181.8 bits (460), Expect = 3.290e-45
Identity = 99/200 (49.50%), Postives = 127/200 (63.50%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGK---QLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLT 589
            +A + EL   G++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTGNRVF            +PHS+KRF G+S D +     DA+ HR  I+G HVA YM  L E++PEKY+  F+ Y+K G+D++ LE +Y K H  IR +P +    K   K H R   K LT
Sbjct:   77 SADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEEDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGSYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKRQFSAYLKLGLDSESLEDMYAKAHENIRKNPVLPTKPKRKLK-HVREGSKVLT 275          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_THEAN (60S ribosomal protein L5 OS=Theileria annulata GN=RPL5 PE=3 SV=1)

HSP 1 Score: 179.874 bits (455), Expect = 1.250e-44
Identity = 98/200 (49.00%), Postives = 126/200 (63.00%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPADT-RRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQ---LDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLT 589
            +A + EL   G++VGLTNYAAAYCTGLLLARR+L  L++D ++ G VEA GE Y VE  D  RRPF+ALLDVG+   TTGNRVF            +PHS+KRF G+S D +     DA+ HR  I+G HVA YM  L E++PEKY+  F+ Y+K G+D++ LE +Y   H  IR +P +    K   K H R   K LT
Sbjct:   77 SADSSELVHYGVKVGLTNYAAAYCTGLLLARRLLTKLKLDSQFVGKVEADGELYHVEEDDNERRPFKALLDVGIKNVTTGNRVFGALKGACDGGLHVPHSEKRFPGYSVDDENNGTYDAQAHRDRIFGTHVANYMEYLKEEDPEKYKKQFSAYLKLGLDSESLEDMYASAHENIRKNPVLPTKPKRKLK-HVREGSKVLT 275          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5B_SCHPO (60S ribosomal protein L5-B OS=Schizosaccharomyces pombe GN=rpl5b PE=2 SV=1)

HSP 1 Score: 178.718 bits (452), Expect = 2.785e-44
Identity = 101/213 (47.42%), Postives = 131/213 (61.50%), Query Frame = 2
Query:    5 AYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPA---PKEHKRYNLKKLTYEERKAKLVERLNA 631
            A++ ELPR G++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  + ++LD E  RKYIYGGHVA YM  L++D+ E+YQ  F+  I  GI++D LE +Y + +A IR DP+ +KS K A     E  +Y  +KLT EERK    ER NA
Sbjct:   78 AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKYTQRKLTAEERK----ERFNA 286          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_SOLME (60S ribosomal protein L5 (Fragment) OS=Solanum melongena GN=RPL5 PE=2 SV=1)

HSP 1 Score: 177.563 bits (449), Expect = 6.204e-44
Identity = 85/114 (74.56%), Postives = 96/114 (84.21%), Query Frame = 2
Query:  320 SKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDDE 661
            SKD KQLDAEVHRKYIYGGHVAAYM+ LMEDEPEKYQSHF+ YIK  +  D +E +YKKVHAAIR DP+ KKS+K  PK HKRYNLKKLTYEERKAKL+ERLNA ++A   DD+
Sbjct:    2 SKDSKQLDAEVHRKYIYGGHVAAYMNILMEDEPEKYQSHFSSYIKADLAPDNIEEMYKKVHAAIRPDPSPKKSQKQPPKTHKRYNLKKLTYEERKAKLIERLNALNAAGGNDDD 115          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5A_SCHPO (60S ribosomal protein L5-A OS=Schizosaccharomyces pombe GN=rpl5a PE=1 SV=2)

HSP 1 Score: 176.792 bits (447), Expect = 1.058e-43
Identity = 100/213 (46.95%), Postives = 131/213 (61.50%), Query Frame = 2
Query:    5 AYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEPA-DTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSKDGKQLDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSEKPA---PKEHKRYNLKKLTYEERKAKLVERLNA 631
            A++ ELPR G++ GL N+ AAY TGLL+ARR L  + + D+YEG  E  GE    E   D  RPF+  LDVGL +T+TG+RVF            IPHS  RF GF  + ++LD E  RKYIYGGHVA YM  L++D+ E+YQ  F+  I  GI++D LE +Y + +A IR DP+ +KS K A     E  ++  +KLT EERK    ER NA
Sbjct:   78 AHSSELPRYGIKWGLANWTAAYATGLLVARRALAKVGLADKYEGVTEPEGEFELTEAIEDGPRPFKVFLDVGLKRTSTGSRVFGAMKGASDGGLFIPHSPNRFPGFDIETEELDDETLRKYIYGGHVAEYMEMLIDDDEERYQKQFSGLIADGIESDQLEDIYAEAYAKIREDPSFQKSGKDAAAFKAESLKHTQRKLTAEERK----ERFNA 286          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_EIMTE (60S ribosomal protein L5 OS=Eimeria tenella GN=RPL5 PE=2 SV=1)

HSP 1 Score: 174.096 bits (440), Expect = 6.859e-43
Identity = 100/237 (42.19%), Postives = 144/237 (60.76%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVEATGEDYSVEP-ADTRRPFRALLDVGLIKTTTGNRVFXXXXXXXXXXXXIPHSDKRFAGFSK--DGKQ--LDAEVHRKYIYGGHVAAYMSTLMEDEPEKYQSHFTEYIKKGIDADGLEALYKKVHAAIRADPTMKKSE-------------KPAPKEHKRYNLKKLTYEERKAKLVERLNAPHSAVDEDD 658
            +A + EL R G++VGLTNY+AAY TGLLLARR+LK   + DE++G  + +GE+Y +E  ++ RRPF+ +LDVG++ TT GNRVF            IPHS+KRF GF+K  DG     + EVHR  IYG HVA YM TL E++PE+YQ+ F+ YI+  ID D +E +Y++    IRA+P   K E             K A  ++ R    KL  E RK ++++++      + E++
Sbjct:   77 SADSQELTRYGIKVGLTNYSAAYATGLLLARRLLKQKGLADEFKGLEKPSGEEYHIEEVSEERRPFKCVLDVGIVATTVGNRVFGAMKGACDGGLHIPHSNKRFPGFTKGEDGADDSYNPEVHRARIYGLHVAEYMRTLKEEDPERYQAQFSAYIRNKIDPDSIEKMYEEAFQKIRANPDPVKKEAREVKRVRQGAMIKTAKSQYVRN--VKLDKETRKERVLKKIQMVADKMAEEE 311          
BLAST of CX291621 vs. ExPASy Swiss-Prot
Match: RL5_PIG (60S ribosomal protein L5 (Fragment) OS=Sus scrofa GN=RPL5 PE=2 SV=3)

HSP 1 Score: 70.0922 bits (170), Expect = 1.395e-11
Identity = 34/48 (70.83%), Postives = 38/48 (79.17%), Query Frame = 2
Query:    2 AAYAHELPRSGLEVGLTNYAAAYCTGLLLARRVLKMLEMDDEYEGNVE 145
            AAYAHELP+ G++VGLTNYAAAYCTGLLLARR+L    M   Y G VE
Sbjct:   77 AAYAHELPKYGVKVGLTNYAAAYCTGLLLARRLLNRFGMXKIYGGQVE 124          
The following BLAST results are available for this feature:
BLAST of CX291621 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 37
Match NameE-valueIdentityDescription
RL5_THEPA3.290e-4549.5060S ribosomal protein L5 OS=Theileria parva GN=RPL... [more]
RL5_THEAN1.250e-4449.0060S ribosomal protein L5 OS=Theileria annulata GN=... [more]
RL5B_SCHPO2.785e-4447.4260S ribosomal protein L5-B OS=Schizosaccharomyces ... [more]
RL5_SOLME6.204e-4474.5660S ribosomal protein L5 (Fragment) OS=Solanum mel... [more]
RL5A_SCHPO1.058e-4346.9560S ribosomal protein L5-A OS=Schizosaccharomyces ... [more]
RL5_EIMTE6.859e-4342.1960S ribosomal protein L5 OS=Eimeria tenella GN=RPL... [more]
RL5_PIG1.395e-1170.8360S ribosomal protein L5 (Fragment) OS=Sus scrofa ... [more]

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Properties
Property NameValue
Genbank descriptionC03011D05SK OF2 Citrus clementina cDNA clone C03011D05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291621 ID=CX291621; Name=CX291621; organism=Citrus clementina; type=EST; length=732bp
TGCTGCTTATGCCCATGAGCTTCCTCGTTCTGGACTTGAAGTAGGTCTTA
CAAACTATGCTGCAGCTTATTGCACTGGGCTTCTTTTGGCTCGTCGTGTC
TTGAAGATGCTTGAAATGGATGATGAGTATGAGGGCAATGTTGAGGCTAC
TGGAGAGGATTACTCTGTCGAACCAGCTGATACAAGGAGGCCATTCCGTG
CTCTCCTTGATGTTGGGCTCATCAAAACAACAACTGGAAACCGTGTCTTT
GGTGCTCTGAAGGGAGCATTAGATGGTGGATTGGACATTCCTCATAGTGA
CAAGAGGTTTGCTGGTTTTTCAAAGGACGGCAAGCAGCTGGATGCTGAGG
TTCACCGCAAGTATATCTATGGTGGACATGTTGCTGCTTACATGAGTACA
TTGATGGAAGATGAGCCAGAGAAGTATCAATCTCACTTCACTGAGTACAT
CAAGAAAGGAATTGATGCTGATGGCTTGGAGGCACTGTACAAGAAGGTTC
ATGCTGCCATTCGTGCAGATCCTACAATGAAGAAATCTGAGAAGCCAGCT
CCCAAAGAACATAAGAGGTATAATTTGAAGAAGCTTACTTACGAGGAAAG
GAAGGCGAAGCTGGTTGAAAGGCTGAATGCCCCTCACTCGGCAGTTGATG
AGGACGACGAATGAAAGCAGCATAACTAGATATGAATTCAAATATGTGGC
AGATCTGCAGTACACATTTGTTGTTGCAGTTC
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