CX291629

Overview
NameCX291629
Unique NameCX291629
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: TMKL1_ARATH (Putative kinase-like protein TMKL1 OS=Arabidopsis thaliana GN=TMKL1 PE=1 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 4.609e-12
Identity = 51/146 (34.93%), Postives = 79/146 (54.11%), Query Frame = 1
Query:  298 ISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRL-SSLKHLDLSNNQLSGKIP------ADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDILGKMLVLSTLN 714
            ++G LP  I   + L+ + L  N LSG IP ++G    L+ ++L+ NA++G +P S+  L   L    +  N LSG +P      +  GNL++L    L GNK +G  P+ I     +  LDLS+N   G +P+ LG +L L +LN
Sbjct:  111 LTGSLPREIGEFSMLQSVFLNINSLSGSIPLELGYTSSLSDVDLSGNALAGVLPPSIWNLCDKLVSFKIHGNNLSGVLPEPALPNSTCGNLQVLD---LGGNKFSGEFPEFITRFKGVKSLDLSSNVFEGLVPEGLG-VLELESLN 252          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: Y2010_ARATH (LRR repeats and ubiquitin-like domain-containing protein At2g30105 OS=Arabidopsis thaliana GN=At2g30105 PE=1 SV=1)

HSP 1 Score: 70.4774 bits (171), Expect = 1.027e-11
Identity = 49/137 (35.77%), Postives = 86/137 (62.77%), Query Frame = 1
Query:  307 QLPSCITSIASLRVLDLVGNKLSGKIP--DDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDILGKMLVLSTL 711
            ++P+ I+S  S++ L L GN LS +    + I +L++L +L+++ N ++  +PS++  L+SL+ LD++NN+L+  +P + G L  L       N++T S+P+SIGN   L ++DLS N IS  +P+   K+  L TL
Sbjct:  167 EVPAKISSFGSMQKLFLQGNGLSDESIQWEGIASLKRLMLLSISHNNLT-VLPSAMGSLTSLRQLDVTNNKLTS-LPNELGLLTQLEILKANNNRIT-SLPESIGNCSFLMEVDLSANIIS-ELPETFTKLRNLKTL 299          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: LRC40_DANRE (Leucine-rich repeat-containing protein 40 OS=Danio rerio GN=lrrc40 PE=2 SV=1)

HSP 1 Score: 70.0922 bits (170), Expect = 1.341e-11
Identity = 49/135 (36.30%), Postives = 78/135 (57.78%), Query Frame = 1
Query:  310 LPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDILGKMLVLSTLN 714
            +P  +  + +L VLD+  N+LS  +PD IG+L++L  L L+ N ++ E+PS + RL++L+ L L  N +  +IP D G L  L    L  N L   IP+S+ N+  L  LDLS N++   +P  + +M  L  L+
Sbjct:   95 IPDDVKLLPALVVLDIHDNQLSS-LPDSIGDLEQLQKLILSHNKLT-ELPSGVWRLTNLRCLHLQQNLIE-QIPRDLGQLVNLDELDLSNNHLI-DIPESLANLQNLVKLDLSCNKLKS-LPPAISQMKNLRMLD 224          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: RLK_ARATH (Probable LRR receptor-like serine/threonine-protein kinase RLK OS=Arabidopsis thaliana GN=RLK PE=2 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 45/131 (34.35%), Postives = 69/131 (52.67%), Query Frame = 1
Query:  298 ISGQLP-SCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVR-LSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDIL 684
            +SG +    ++ + SLR L  + NK  G  PD    L  L  L L++N   G+IP      +  LK + L+ N+ +G+IP+    L  L    L GN+ TG IP+     ++L  L+LS N ++GPIP+ L
Sbjct:   85 LSGSIDIEALSGLTSLRTLSFMNNKFEGPFPD-FKKLAALKSLYLSNNQFGGDIPGDAFEGMGWLKKVHLAQNKFTGQIPSSVAKLPKLLELRLDGNQFTGEIPEF---EHQLHLLNLSNNALTGPIPESL 211          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: POPC_RALSO (Protein popC OS=Ralstonia solanacearum GN=popC PE=4 SV=2)

HSP 1 Score: 69.707 bits (169), Expect = 1.751e-11
Identity = 53/156 (33.97%), Postives = 84/156 (53.85%), Query Frame = 1
Query:  244 AICQLDTLSTLVIADWKGISGQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDILGKMLVLSTL 711
            +I  L TL TL + D   + G LP+    ++ L+ L L GN++  ++P  +G    L  L + D A++G +P+    L +L HL LSN QL  ++PA+ GNL  L    L+GN+   ++P S+G +  L +L L  + +S   P  +G    L TL
Sbjct:  423 SIGNLFTLKTLSLQDNPKL-GSLPASFGQLSGLQELTLNGNRIH-ELP-SMGGASSLQTLTVDDTALAG-LPADFGALRNLAHLSLSNTQLR-ELPANTGNLHALKTLSLQGNQQLATLPSSLGYLSGLEELTLKNSSVSELPP--MGPGSALKTL 571          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: SHOC2_PONAB (Leucine-rich repeat protein SHOC-2 OS=Pongo abelii GN=SHOC2 PE=2 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 51/154 (33.12%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  256 LDTLSTLVIADWKGIS-GQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDILGKMLVLSTLN 714
            LD L  L + D +     ++PS +  + SL  L L  N+++  +  DI NL KL++L++ +N +  ++P+ +  L +L  LD+++NQL   +P + GN   ++   L+ N+L   +PD+IGN+  L+ L L  N++S  IP  L K   L  LN
Sbjct:  165 LDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRIT-TVEKDIKNLSKLSMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLE-HLPKEIGNCTQITNLDLQHNELL-DLPDTIGNLSSLSRLGLRYNRLSA-IPRSLAKCSALEELN 313          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: SHOC2_HUMAN (Leucine-rich repeat protein SHOC-2 OS=Homo sapiens GN=SHOC2 PE=1 SV=2)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 51/154 (33.12%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  256 LDTLSTLVIADWKGIS-GQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDILGKMLVLSTLN 714
            LD L  L + D +     ++PS +  + SL  L L  N+++  +  DI NL KL++L++ +N +  ++P+ +  L +L  LD+++NQL   +P + GN   ++   L+ N+L   +PD+IGN+  L+ L L  N++S  IP  L K   L  LN
Sbjct:  165 LDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRIT-TVEKDIKNLSKLSMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLE-HLPKEIGNCTQITNLDLQHNELL-DLPDTIGNLSSLSRLGLRYNRLSA-IPRSLAKCSALEELN 313          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: SHOC2_BOVIN (Leucine-rich repeat protein SHOC-2 OS=Bos taurus GN=SHOC2 PE=2 SV=1)

HSP 1 Score: 68.5514 bits (166), Expect = 3.901e-11
Identity = 51/154 (33.12%), Postives = 87/154 (56.49%), Query Frame = 1
Query:  256 LDTLSTLVIADWKGIS-GQLPSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQISGPIPDILGKMLVLSTLN 714
            LD L  L + D +     ++PS +  + SL  L L  N+++  +  DI NL KL++L++ +N +  ++P+ +  L +L  LD+++NQL   +P + GN   ++   L+ N+L   +PD+IGN+  L+ L L  N++S  IP  L K   L  LN
Sbjct:  165 LDNLKKLRMLDLRHNKLREIPSVVYRLDSLTTLYLRFNRIT-TVEKDIKNLSKLSMLSIRENKIK-QLPAEIGELCNLITLDVAHNQLE-HLPKEIGNCTQITNLDLQHNELL-DLPDTIGNLSSLSRLGLRYNRLSA-IPRSLAKCSALEELN 313          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: GEFV_DICDI (Ras guanine nucleotide exchange factor V OS=Dictyostelium discoideum GN=gefV PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.655e-11
Identity = 45/117 (38.46%), Postives = 68/117 (58.12%), Query Frame = 1
Query:  313 PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQIS 663
            P  I  I SLRVL L  N +  KIPD IGNL  L  L L++N ++ ++PS++  L +L+ L L  N++ G +P +F  L  L+  +L  N L   +PD + ++ +L  L L  NQ+S
Sbjct:  278 PMDILEIVSLRVLKLQDNDID-KIPDKIGNLLNLNELFLSENKIT-QLPSTIGELINLRKLYLEYNKI-GSLPQEFSKLSKLNILILHNNDLK-FVPDQLHSLSQLLRLSLDENQLS 390          
BLAST of CX291629 vs. ExPASy Swiss-Prot
Match: LRC57_HUMAN (Leucine-rich repeat-containing protein 57 OS=Homo sapiens GN=LRRC57 PE=1 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.691e-11
Identity = 49/117 (41.88%), Postives = 73/117 (62.39%), Query Frame = 1
Query:  313 PSCITSIASLRVLDLVGNKLSGKIPDDIGNLQKLTVLNLADNAVSGEIPSSLVRLSSLKHLDLSNNQLSGKIPADFGNLKMLSRALLRGNKLTGSIPDSIGNMYRLADLDLSTNQIS 663
            P  I     L+ L L  NKL+  +PD+I NL+KL  L+L +N +  E+PS+  +LS+LK L LS NQL G +P    +L+ L    L  N++  SIPDS+G + ++ +L+L+ NQIS
Sbjct:   55 PLLIGKFTLLKSLSLNNNKLT-VLPDEICNLKKLETLSLNNNHLR-ELPSTFGQLSALKTLSLSGNQL-GALPPQLCSLRHLDVMDLSKNQIR-SIPDSVGEL-QVIELNLNQNQIS 166          
The following BLAST results are available for this feature:
BLAST of CX291629 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 120
Match NameE-valueIdentityDescription
TMKL1_ARATH4.609e-1234.93Putative kinase-like protein TMKL1 OS=Arabidopsis ... [more]
Y2010_ARATH1.027e-1135.77LRR repeats and ubiquitin-like domain-containing p... [more]
LRC40_DANRE1.341e-1136.30Leucine-rich repeat-containing protein 40 OS=Danio... [more]
RLK_ARATH1.751e-1134.35Probable LRR receptor-like serine/threonine-protei... [more]
POPC_RALSO1.751e-1133.97Protein popC OS=Ralstonia solanacearum GN=popC PE=... [more]
SHOC2_PONAB3.901e-1133.12Leucine-rich repeat protein SHOC-2 OS=Pongo abelii... [more]
SHOC2_HUMAN3.901e-1133.12Leucine-rich repeat protein SHOC-2 OS=Homo sapiens... [more]
SHOC2_BOVIN3.901e-1133.12Leucine-rich repeat protein SHOC-2 OS=Bos taurus G... [more]
GEFV_DICDI6.655e-1138.46Ras guanine nucleotide exchange factor V OS=Dictyo... [more]
LRC57_HUMAN8.691e-1141.88Leucine-rich repeat-containing protein 57 OS=Homo ... [more]

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Properties
Property NameValue
Genbank descriptionC03011E02SK OF2 Citrus clementina cDNA clone C03011E02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291629 ID=CX291629; Name=CX291629; organism=Citrus clementina; type=EST; length=714bp
GGGCGTTGGCGCCTGTTCGCCATCGGACAAGCAGCCCTCTTAGCCCTCAA
GTCCTCACTCAACGAACCTTACTTGGGCATCTTCGCCTCCTGGACCGGCG
ATAACTGCTGCACCAACTGGTACGGCGTCAGCTGCGACCCAACAACTCGC
CGAGTCACCGATATTTCGCTTCGTGGTGAGTCCGAGGACCCCATATTAGT
CAAAGCCGGCCGCAGTGGCTACATGACTGGGTCCATTAACCCTGCCATTT
GCCAGCTCGACACTCTTTCTACCTTAGTCATCGCCGACTGGAAAGGAATC
TCCGGTCAGCTGCCATCCTGCATTACTTCGATTGCGTCACTTCGTGTTTT
GGACCTCGTCGGTAACAAATTATCGGGTAAGATTCCGGATGATATCGGGA
ATCTTCAGAAGCTAACTGTTCTAAATTTAGCCGACAATGCCGTCTCTGGT
GAAATCCCATCTTCGCTTGTTCGGCTTTCTAGTTTAAAGCATCTAGATCT
CAGCAACAACCAACTTTCCGGCAAGATACCGGCGGATTTCGGAAATCTGA
AAATGCTGAGCCGGGCTTTACTCAGAGGAAACAAACTTACTGGGTCAATC
CCGGATTCTATCGGGAACATGTATCGGCTTGCCGATTTGGATTTGTCCAC
GAATCAAATATCGGGTCCGATACCGGACATCTTGGGCAAAATGCTAGTCT
TGTCAACTCTTAAC
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