CX291642

Overview
NameCX291642
Unique NameCX291642
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length722
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
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BLAST of CX291642 vs. ExPASy Swiss-Prot
Match: ACBD6_RAT (Acyl-CoA-binding domain-containing protein 6 OS=Rattus norvegicus GN=Acbd6 PE=2 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.762e-11
Identity = 40/118 (33.90%), Postives = 61/118 (51.69%), Query Frame = 3 
Query:  369 LQLYALYKIATEGPCSAPQPSALKMTARAKWQAWQKLGAMPPEEAMQKYIDIVTELYPTWAAGSSLKSKRGQEDAASTDSKAPMGPVFSSFAYEEESGNDLKMDAIHAFAREGDMGYL 722
            L LYA YK    G C+ P+P+      + KW+AW+ LG   P +AMQ+YI  V +L P W     +  K+G+E ++        GPV SS  +EE    + K   I  + RE ++ ++
Sbjct:   66 LYLYARYKQVKVGNCNIPKPNFFDFEGKQKWEAWKALGDSSPSQAMQEYIAAVKKLDPGW--NPQVSEKKGKEGSSGFG-----GPVVSSLYHEETIREEDK--NIFDYCRENNIDHI 174
The following BLAST results are available for this feature:
BLAST of CX291642 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 11
Match NameE-valueIdentityDescription
ACBD6_RAT6.762e-1133.90Acyl-CoA-binding domain-containing protein 6 OS=Ra... [more]

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Properties
Property NameValue
Genbank descriptionC03011F03SK OF2 Citrus clementina cDNA clone C03011F03, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291642 ID=CX291642; Name=CX291642; organism=Citrus clementina; type=EST; length=722bp
CTTATCTTGAGGCTAAGTTAATCTCTGTCGTCCTTTCTTTCAAAGAAGAT
AATCTCTCTATCACTCGCAGTAACAATAACAACTACAATGAACCAAAGCG
GACTAAAGACGACGTAGTCGTCGCCGCCCCGAATCCGCGCGGCCCGGAGG
CGGATTCGGGTCGGCCTCACGATACGGAGTCGATGATCGCGGAGCAAGGA
AGCGTGAGGAACGAAGAGAGCTTGCCTTGCAGTGATGTTGACAGCGATGG
TGACGATGATTGGGAGGGTGTCGAGTCTACGGAACTGGATGAGATGTTCA
GTGCGGCCACGGCATTTGTGGCGGCCAGTGCTGCTGCCTCGTCGAAGAAG
GTGTCCAATGATGTGCAGTTGCAGCTCTATGCGTTGTACAAGATTGCCAC
TGAAGGTCCCTGTAGTGCTCCCCAGCCTTCTGCGTTGAAAATGACCGCTC
GGGCCAAGTGGCAAGCATGGCAGAAATTGGGTGCCATGCCTCCAGAAGAA
GCAATGCAGAAATACATTGATATTGTTACAGAGCTGTATCCTACTTGGGC
TGCTGGTTCATCTTTGAAGAGCAAACGTGGACAAGAAGATGCGGCAAGCA
CAGATTCCAAAGCACCAATGGGTCCTGTTTTCAGCTCTTTTGCGTATGAG
GAGGAATCTGGAAATGATTTGAAAATGGATGCTATCCATGCCTTTGCTAG
AGAAGGAGACATGGGATATCTG
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