CX291648

Overview
NameCX291648
Unique NameCX291648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METS3 (Elongation factor 2 OS=Methanobrevibacter smithii (strain PS / ATCC 35061 / DSM 861) GN=fusA PE=3 SV=1)

HSP 1 Score: 98.9821 bits (245), Expect = 2.674e-20
Identity = 59/162 (36.42%), Postives = 89/162 (54.94%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            A  +G LA+E   G+ F++ D  LH DA+HRG  QV+P  R  IYAS ++A P LLEP+  V I  P+  +G     +  +RG + +  Q     +  I++ +PV E FGF+G +R+A  G    +C++     MS     P     Q+V +IR+RKGL  +
Sbjct:  568 ALNDGPLAKEIAMGLKFKLHDAKLHEDAVHRGPAQVLPAIRNAIYASMMSAGPTLLEPMQKVFINTPQDYMGPCTREIQNRRGQIVDMGQE--GDMATIESKVPVAEMFGFAGDIRSAAEG----RCLWS--TEMSGFERLPREMQNQIVKEIRQRKGLSPE 721          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METM5 (Elongation factor 2 OS=Methanococcus maripaludis (strain C5 / ATCC BAA-1333) GN=fusA PE=3 SV=1)

HSP 1 Score: 98.5969 bits (244), Expect = 3.492e-20
Identity = 57/160 (35.62%), Postives = 87/160 (54.37%), Query Frame = 2
Query:   11 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            + G LA E ++G+  ++ D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ +      PG    ++V  IR RKGLK +
Sbjct:  576 RNGPLAAEKVQGVKIKLMDATFHEDAIHRGPAQIIPAVRFGVRDAVSQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFEKV------PGELQPKIVKQIRDRKGLKSE 727          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METVS (Elongation factor 2 OS=Methanococcus vannielii (strain SB / ATCC 35089 / DSM 1224) GN=fusA PE=3 SV=2)

HSP 1 Score: 97.8265 bits (242), Expect = 5.957e-20
Identity = 57/160 (35.62%), Postives = 86/160 (53.75%), Query Frame = 2
Query:   11 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            K G LA E  +G+  ++ D   H DAIHRG  Q+IP  R  +  +  +AKP LLEP+  + I  P+  +G     +N +RG +  +M++ G  +  IK  +PV E FGF+G +R AT G+      F  ++ +      P     ++VA IR RKGLK +
Sbjct:  576 KGGPLASERAQGVKIKLIDATFHEDAIHRGPSQIIPAIRFGVRDAVSSAKPILLEPMQKIYINTPQDYMGDAIREINNRRGQIV-DMEQEG-DMAIIKGSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERV------PNEIQTKVVAQIRDRKGLKSE 727          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_META3 (Elongation factor 2 OS=Methanococcus aeolicus (strain Nankai-3 / ATCC BAA-1280) GN=fusA PE=3 SV=1)

HSP 1 Score: 95.9005 bits (237), Expect = 2.264e-19
Identity = 59/160 (36.88%), Postives = 88/160 (55.00%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLK 484
            A K G LA E  +G+  ++ D V H DAIHRG  Q+IP  R  +  +   A   LLEP+  V I  P+  +G     L+ +RG +  +M++ G  +  IK+  PV E FGF+G +R AT G+      F  ++ + ++ L+P     Q+V +IR RKGLK
Sbjct:  574 AVKNGPLAAEKCQGVKVKLMDAVFHEDAIHRGPAQLIPAVRTGVRDAIAQANVGLLEPIQNVYISTPQDYMGDAMKELSNRRGQIL-DMEQEG-DMTTIKSKAPVSEMFGFAGAIRGATQGRCLWSIEFGGFEKVPTE-LQP-----QIVKEIRTRKGLK 725          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METMP (Elongation factor 2 OS=Methanococcus maripaludis GN=fusA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   11 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  576 RNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPNE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METM7 (Elongation factor 2 OS=Methanococcus maripaludis (strain C7 / ATCC BAA-1331) GN=fusA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   11 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  576 RNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METM6 (Elongation factor 2 OS=Methanococcus maripaludis (strain C6 / ATCC BAA-1332) GN=fusA PE=3 SV=1)

HSP 1 Score: 95.5153 bits (236), Expect = 2.956e-19
Identity = 56/160 (35.00%), Postives = 88/160 (55.00%), Query Frame = 2
Query:   11 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            + G LA E ++G+   + D   H DAIHRG  Q+IP  R  +  +   AKP LLEP+  V I  P+  +G     +N +RG +  +M++ G  +  IK+ +PV E FGF+G +R AT G+      F  ++ + ++ L+P     ++   IR RKGLK +
Sbjct:  576 RNGPLAAEKVQGVKIRLVDATFHEDAIHRGPAQIIPAVRFGVRDAVAQAKPVLLEPMQSVYINTPQDYMGDGMKEINNRRGQIL-DMEQEG-DMSIIKSSVPVAEMFGFAGAIRGATQGRCLWSVEFSGFERVPAE-LQP-----KIAKQIRDRKGLKSE 727          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: RIA1_SCHPO (Ribosome assembly protein 1 OS=Schizosaccharomyces pombe GN=ria1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 57/181 (31.49%), Postives = 93/181 (51.38%), Query Frame = 2
Query:   14 EGALAEENMRGICFEVCDVVLHADAIHRG---------GGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL-EPGTQ---------------AAQLVADIRKRKGL 481
            +G L  E ++GIC  +    +  D+              GQVI   +  I    L   PRL+  +Y  ++QA  + LG +Y V++++RG V +E  + GTP + +KA +PV+ESFGF+  +   TSG A+PQ +F  ++M+  +P   P T+               A + + ++RKRKGL
Sbjct:  802 QGPLCAEPVQGICVSIDQFDISDDSEDSKLLTINNPQIPGQVISVVKESIRHGFLGWSPRLMLAMYSCDVQATSEVLGRVYGVVSKRRGRVIDEEMKEGTPFFIVKALIPVVESFGFAVEILKRTSGAAYPQLIFHGFEMLDENPFWVPTTEEELEDLGELADRENIAKRYMLNVRKRKGL 982          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: ETUD1_MOUSE (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Mus musculus GN=Eftud1 PE=2 SV=1)

HSP 1 Score: 95.1301 bits (235), Expect = 3.861e-19
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  104 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGTQAAQLVADIRKRKGL 481
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +RKRKGL
Sbjct:  966 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATSDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEVIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1107          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: ETUD1_HUMAN (Elongation factor Tu GTP-binding domain-containing protein 1 OS=Homo sapiens GN=EFTUD1 PE=1 SV=2)

HSP 1 Score: 94.3597 bits (233), Expect = 6.586e-19
Identity = 52/142 (36.62%), Postives = 76/142 (53.52%), Query Frame = 2
Query:  104 GQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPL----------------EPGTQAAQLVADIRKRKGL 481
            GQ+I T +     +      RL+  +Y  +I A    LG +Y+VL+++ G V +E  + GT ++ IKA LPV ESFGF+  +R  TSG A PQ VF HW+++ SDP                 +   QA + +  +RKRKGL
Sbjct:  959 GQLIATMKEACRYALQVKPQRLMAAMYTCDIMATGDVLGRVYAVLSKREGRVLQEEMKEGTDMFIIKAVLPVAESFGFADEIRKRTSGLASPQLVFSHWEIIPSDPFWVPTTEEEYLHFGEKADSENQARKYMNAVRKRKGL 1100          
The following BLAST results are available for this feature:
BLAST of CX291648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_METS32.674e-2036.42Elongation factor 2 OS=Methanobrevibacter smithii ... [more]
EF2_METM53.492e-2035.63Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METVS5.957e-2035.63Elongation factor 2 OS=Methanococcus vannielii (st... [more]
EF2_META32.264e-1936.88Elongation factor 2 OS=Methanococcus aeolicus (str... [more]
EF2_METMP2.956e-1935.00Elongation factor 2 OS=Methanococcus maripaludis G... [more]
EF2_METM72.956e-1935.00Elongation factor 2 OS=Methanococcus maripaludis (... [more]
EF2_METM62.956e-1935.00Elongation factor 2 OS=Methanococcus maripaludis (... [more]
RIA1_SCHPO3.861e-1931.49Ribosome assembly protein 1 OS=Schizosaccharomyces... [more]
ETUD1_MOUSE3.861e-1936.62Elongation factor Tu GTP-binding domain-containing... [more]
ETUD1_HUMAN6.586e-1936.62Elongation factor Tu GTP-binding domain-containing... [more]

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Properties
Property NameValue
Genbank descriptionC03011F09SK OF2 Citrus clementina cDNA clone C03011F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291648 ID=CX291648; Name=CX291648; organism=Citrus clementina; type=EST; length=714bp
GTGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCT
GCTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGT
GGTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCT
CACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGG
CTCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGT
GGTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACAT
CAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGA
GGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTTGATCACTGG
GACATGATGTCATCCGATCCACTGGAGCCTGGTACACAGGCTGCACAGCT
TGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAAATGACACCAC
TATCTGAGTTTGAGGACAAGCTGTAAACATTTCGTCTTGACATCAAGGGT
GAGATTGCGCAGCTTGTTGCTGATATCAGGAAGAGGGAGCAAATGACACC
GCTATCCGAGTAGAGGACGAGCTGTAAACATTTCATCTTGACATCAAGGG
TGAGATTGCGCAGCAATATTTTTTGCTGATGCTTATTTTTGTTTCAAGTT
TTTCAATATCCTCA
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