CX291648

Overview
NameCX291648
Unique NameCX291648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_HALMA (Elongation factor 2 OS=Haloarcula marismortui GN=fusA PE=3 SV=1)

HSP 1 Score: 93.9745 bits (232), Expect = 8.601e-19
Identity = 57/169 (33.73%), Postives = 92/169 (54.44%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQMTPLSEF 511
            A  +G LA E ++G    + D  LH DAIHRG  QVIP  R  ++ S + A  +LLEP+  V I  P   +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + ++ +D L+P       +++IR+RKG+K+++ P  ++
Sbjct:  567 ALDDGPLASEPVQGSLIRLHDARLHEDAIHRGPAQVIPAVREAVHNSLIDASIKLLEPIQQVRIDVPNDHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFQVL-ADNLQP-----DKISEIRERKGMKQELNPAIDY 727          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_THEAC (Elongation factor 2 OS=Thermoplasma acidophilum GN=fusA PE=3 SV=2)

HSP 1 Score: 93.5893 bits (231), Expect = 1.123e-18
Identity = 57/158 (36.08%), Postives = 88/158 (55.70%), Query Frame = 2
Query:   17 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG + E+M++ G  + ++ A +PV   FGF+  +R AT G+     V   ++      + P  Q + +V  IR+RKGL+++
Sbjct:  573 GPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRVLLEPVQRVFINVPQEEMGAAINEIQQRRG-IIEDMKQEGDEI-SLTAKVPVAGMFGFASAIRGATGGK-----VLWSFENAGYQKVPPELQDS-IVRSIRERKGLRQE 722          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_PICTO (Elongation factor 2 OS=Picrophilus torridus GN=fusA PE=3 SV=1)

HSP 1 Score: 93.2041 bits (230), Expect = 1.467e-18
Identity = 60/163 (36.81%), Postives = 87/163 (53.37%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGLKEQ 490
            A  +G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   A   LLEP+  V I  P++ +G + + L Q+RG V E+MQ+ G  +  I A +PV    GF+  +R+AT G+         W+  ++     P      +VA IR+RKGLK +
Sbjct:  569 AMDKGPLANEKVYGLKVSLMDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAGRVLLEPMQKVFISVPQEIMGSVTNELQQRRG-VVEDMQQNGEEI-TIIAKVPVAGMIGFASAIRSATGGKVI-------WNSENAGYQRVPYEMQKDVVAKIRERKGLKPE 722          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METST (Elongation factor 2 OS=Methanosphaera stadtmanae (strain DSM 3091) GN=fusA PE=3 SV=1)

HSP 1 Score: 91.2781 bits (225), Expect = 5.575e-18
Identity = 54/160 (33.75%), Postives = 85/160 (53.12%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 481
            A  +G LA E   GI   + D  +H DA+HRG  QV+P  R+ +Y + + A+P L+EP+  V I  P+  +G     +  +RG + E  Q     +  I++ +PV E FGF+G +R+A  G    +C+   W   +S     P     ++V +IR+RKGL
Sbjct:  568 ALDDGPLANEKAMGIKISLMDAKIHEDAVHRGPAQVLPAIRKAVYGAIMLAQPTLMEPMQKVYISVPQDYMGAATREVQNRRGQIVEMGQE--GDMSTIESKVPVSEMFGFAGDIRSAAEG----RCI---WSTENSGFERIPRELQNKIVKEIRERKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_THEVO (Elongation factor 2 OS=Thermoplasma volcanium GN=fusA PE=3 SV=1)

HSP 1 Score: 90.8929 bits (224), Expect = 7.281e-18
Identity = 58/158 (36.71%), Postives = 87/158 (55.06%), Query Frame = 2
Query:   17 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQ 490
            G LA E + G+   + D  LH D+IHRG  QVIP  R  IY +   AK  LLEPV  V I  P++ +G   + + Q+RG V E+M + G  + ++ A +PV   FGF+  +R+AT G+     V   ++      + P  Q + +V  IR+RKGL+ +
Sbjct:  573 GPLANEKVFGVKARLVDAKLHEDSIHRGPAQVIPAGRNSIYGAMCEAKRILLEPVQKVFINVPQEEMGSAINEVQQRRG-VIEDMTQEGEEV-SLVARIPVSGMFGFASAIRSATGGK-----VLWSFENAGYQKVPPELQDS-VVRSIRERKGLRPE 722          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_PYRWO (Elongation factor 2 OS=Pyrococcus woesei GN=fusA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 481
            A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  568 AMDEGPLAKEPVMKVIVRLVDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_PYRKO (Elongation factor 2 OS=Pyrococcus kodakaraensis GN=fusA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 481
            A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG +  +M++ G  +  I    PV E FGF+G +R ATSG+A      +H    +     P   A Q++  IR+RKGL
Sbjct:  568 AMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRSAIHCAMMKAGPVLYEPYQKVIINVPYEYMGAVSRELNQRRGQLI-DMRQEGEVMI-IIGEAPVAEMFGFAGAIRGATSGKAL--WTTEH----AGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_PYRFU (Elongation factor 2 OS=Pyrococcus furiosus GN=fusA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 55/160 (34.38%), Postives = 84/160 (52.50%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 481
            A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   ++Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  568 AMDEGPLAKEPVMKVIVRLVDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSREISQRRGQLI-DMRQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_NATPD (Elongation factor 2 OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=fusA PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.767e-17
Identity = 57/163 (34.97%), Postives = 89/163 (54.60%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 493
            A  +G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A+ +LLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+P T     + +IR+RKG+K ++
Sbjct:  568 ALNDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPAVREAVHNALIDAEIKLLEPIQEVRIDVPNEHMGAASGEIQGRRGRV-DDMYQEG-DLMVVEGVAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQPET-----IDEIRERKGMKLEL 722          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: SN114_YEAST (114 kDa U5 small nuclear ribonucleoprotein component OS=Saccharomyces cerevisiae GN=SNU114 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 58/176 (32.95%), Postives = 92/176 (52.27%), Query Frame = 2
Query:    2 WASKEGALAEENMRGICFEVCDVVLHADA-IHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRG-HVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDH--W-----DMMSSDPLEPGTQAAQL-------VADIRKRKGL 481
            WA KEG LAEE + G+ +++  + + +D  I     Q+IP  ++  Y   LTA P LLEP+Y V+I      L  +  ++ ++RG  +++ ++  GTPL  ++  +PVIES GF   LR +T+G    Q  F H  W     D++  D   P  + A +       V   R+RKG+
Sbjct:  801 WAVKEGPLAEEPIYGVQYKLLSISVPSDVNIDVMKSQIIPLMKKACYVGLLTAIPILLEPIYEVDITVHAPLLPIVEELMKKRRGSRIYKTIKVAGTPLLEVRGQVPVIESAGFETDLRLSTNGLGMCQLYFWHKIWRKVPGDVLDKDAFIPKLKPAPINSLSRDFVMKTRRRKGI 976          
The following BLAST results are available for this feature:
BLAST of CX291648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
EF2_HALMA8.601e-1933.73Elongation factor 2 OS=Haloarcula marismortui GN=f... [more]
EF2_THEAC1.123e-1836.08Elongation factor 2 OS=Thermoplasma acidophilum GN... [more]
EF2_PICTO1.467e-1836.81Elongation factor 2 OS=Picrophilus torridus GN=fus... [more]
EF2_METST5.575e-1833.75Elongation factor 2 OS=Methanosphaera stadtmanae (... [more]
EF2_THEVO7.281e-1836.71Elongation factor 2 OS=Thermoplasma volcanium GN=f... [more]
EF2_PYRWO2.767e-1734.38Elongation factor 2 OS=Pyrococcus woesei GN=fusA P... [more]
EF2_PYRKO2.767e-1735.22Elongation factor 2 OS=Pyrococcus kodakaraensis GN... [more]
EF2_PYRFU2.767e-1734.38Elongation factor 2 OS=Pyrococcus furiosus GN=fusA... [more]
EF2_NATPD2.767e-1734.97Elongation factor 2 OS=Natronomonas pharaonis (str... [more]
SN114_YEAST3.614e-1732.95114 kDa U5 small nuclear ribonucleoprotein compone... [more]

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Properties
Property NameValue
Genbank descriptionC03011F09SK OF2 Citrus clementina cDNA clone C03011F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291648 ID=CX291648; Name=CX291648; organism=Citrus clementina; type=EST; length=714bp
GTGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCT
GCTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGT
GGTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCT
CACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGG
CTCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGT
GGTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACAT
CAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGA
GGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTTGATCACTGG
GACATGATGTCATCCGATCCACTGGAGCCTGGTACACAGGCTGCACAGCT
TGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAAATGACACCAC
TATCTGAGTTTGAGGACAAGCTGTAAACATTTCGTCTTGACATCAAGGGT
GAGATTGCGCAGCTTGTTGCTGATATCAGGAAGAGGGAGCAAATGACACC
GCTATCCGAGTAGAGGACGAGCTGTAAACATTTCATCTTGACATCAAGGG
TGAGATTGCGCAGCAATATTTTTTGCTGATGCTTATTTTTGTTTCAAGTT
TTTCAATATCCTCA
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