CX291648

Overview
NameCX291648
Unique NameCX291648
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length714
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: RIA1_YEAST (Ribosome assembly protein 1 OS=Saccharomyces cerevisiae GN=RIA1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 61/188 (32.45%), Postives = 92/188 (48.94%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDV-VLHADAIHRG------------GGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQL-----VAD-----------IRKRKGL 481
            A  EG LA E ++G+C  V  V  +  D I                G++I + R  I+ + L   PR++  +Y  +IQ     LG +Y+V+ Q+ G +  E  + GTP + I+A++PV+E+FG S  +R  TSG A PQ VF  ++ +  DP    T   +L      AD           IR+RKGL
Sbjct:  904 AVSEGPLANEPVQGMCVLVESVHKMSQDEIESIEDPRYQQHIVDLSGRLITSTRDAIHEAFLDWSPRIMWAIYSCDIQTSVDVLGKVYAVILQRHGKIISEEMKEGTPFFQIEAHVPVVEAFGLSEDIRKRTSGAAQPQLVFSGFECIDLDPFWVPTTEEELEELGDTADRENIARKHMNAIRRRKGL 1091          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_THEGJ (Elongation factor 2 OS=Thermococcus gammatolerans (strain DSM 15229 / JCM 11827 / EJ3) GN=fusA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 56/159 (35.22%), Postives = 83/159 (52.20%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 481
            A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   LNQ+RG +  +M++ G  +  I    PV E FGF+G +R ATSG+A      +H    +     P   A Q++  IR+RKGL
Sbjct:  568 AMDEGPLAKEPVMKVIVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGAVSRELNQRRGQLI-DMRQEGEVMI-IIGEAPVAEMFGFAGAIRGATSGKAL--WTTEH----AGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_NANEQ (Elongation factor 2 OS=Nanoarchaeum equitans GN=fusA PE=3 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 55/155 (35.48%), Postives = 83/155 (53.55%), Query Frame = 2
Query:   17 GALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGL 481
            G +A E   G+  ++ D  LH DAIHRG GQVIP  R  I  +   A   L EPV ++ +  P   +G + +++N +RG + +        L  IKA +PV E  GF+ TLR+ATSG+     V   ++ +  +  +      Q+V +IR+RKGL
Sbjct:  590 GPIAWEPCIGLIVKLTDAQLHEDAIHRGPGQVIPAVREAIKLAMKDAGLVLYEPVQVILVDVPPDYIGDVTALINSRRGAILDIQTEEDRAL--IKAKVPVREMIGFTDTLRSATSGRGVWYLVDQVYEPVPRELFD------QIVREIRQRKGL 736          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_METTH (Elongation factor 2 OS=Methanobacterium thermoautotrophicum GN=fusA PE=3 SV=2)

HSP 1 Score: 88.5817 bits (218), Expect = 3.614e-17
Identity = 48/163 (29.45%), Postives = 84/163 (51.53%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGLKEQ 490
            A   G +A+E + G+  ++ D  +H DA+HRG  QV+P  R+ I+ + ++A+P LLEP+  V I  P+  +G     +  +RG +    Q     +  +++ +PV E FGF+G +R+AT G+         W   ++     P      +  ++R RKGL  +
Sbjct:  568 AMDNGPVAKEKVMGVKIKLMDAKIHEDAVHRGPAQVLPAIRKGIFGAMMSAEPVLLEPIQKVFINVPQDYMGSATREIQNRRGQIVNMTQE--GDMVTVESTVPVAEMFGFAGDIRSATEGRCL-------WSTENAGFERLPNELQHTITREVRTRKGLSPE 721          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_THEON (Elongation factor 2 OS=Thermococcus onnurineus (strain NA1) GN=fusA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 55/160 (34.38%), Postives = 82/160 (51.25%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 481
            A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + A P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+G LR ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  568 AMDEGPLAKEPVMKVMVRLHDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKAGPVLYEPYQKVIINIPYEYMGSVSREINQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGALRGATSGKAL-------WSTEHAGFKRVPNELAVNIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_PYRHO (Elongation factor 2 OS=Pyrococcus horikoshii GN=fusA PE=3 SV=2)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 54/160 (33.75%), Postives = 83/160 (51.88%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 481
            A  EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+G++R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  568 AMDEGPLAREPVMKVIVRLLDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGSIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_PYRAB (Elongation factor 2 OS=Pyrococcus abyssi GN=fusA PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.164e-17
Identity = 54/160 (33.75%), Postives = 83/160 (51.88%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 481
            A  EG LA+E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   + Q+RG +  +M++ G  +  I A  PV E FGF+G +R+ATSG+A        W    +     P   A Q++  IR+RKGL
Sbjct:  568 AMDEGPLAKEPVMKVIVRLIDAQVHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVIINIPYEYMGAVSREITQRRGQLV-DMKQEG-EVMTIIAEAPVAEMFGFAGAIRSATSGRAL-------WSTEHAGFKRVPNELAQQIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_THESM (Elongation factor 2 OS=Thermococcus sibiricus (strain MM 739 / DSM 12597) GN=fusA PE=3 SV=1)

HSP 1 Score: 86.6557 bits (213), Expect = 1.373e-16
Identity = 53/160 (33.12%), Postives = 81/160 (50.62%), Query Frame = 2
Query:    5 ASKEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSD-PLEPGTQAAQLVADIRKRKGL 481
            A  EG LA E +  +   + D  +H D +HRG  Q+ P  R  I+ + + + P L EP   V I  P + +G +   +NQ+RG +  +M++ G  +  I +  PV E FGF+G +R ATSG+A        W    +     P   A  ++  IR+RKGL
Sbjct:  568 AMDEGPLAREPVMKVIVRLVDAKIHEDNVHRGPAQIYPAIRTAIHCAMMKSNPVLYEPYQKVVINVPYEYMGSVSREMNQRRGQLI-DMRQEGEVMI-IISEAPVAEMFGFAGAIRGATSGRAL-------WSTEHAGFKRVPTELAINIIRQIRQRKGL 718          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_HALSA (Elongation factor 2 OS=Halobacterium salinarium GN=fusA PE=3 SV=2)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   11 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 493
            ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+      +++ +IR+RKG+K ++
Sbjct:  569 EDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQ-----REIIMEIRERKGMKTEL 721          
BLAST of CX291648 vs. ExPASy Swiss-Prot
Match: EF2_HALS3 (Elongation factor 2 OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=fusA PE=3 SV=1)

HSP 1 Score: 86.2705 bits (212), Expect = 1.793e-16
Identity = 55/161 (34.16%), Postives = 88/161 (54.66%), Query Frame = 2
Query:   11 KEGALAEENMRGICFEVCDVVLHADAIHRGGGQVIPTARRVIYASQLTAKPRLLEPVYMVEIQAPEQALGGIYSVLNQKRGHVFEEMQRPGTPLYNIKAYLPVIESFGFSGTLRAATSGQAFPQCVFDHWDMMSSDPLEPGTQAAQLVADIRKRKGLKEQM 493
            ++G LA E + G    + D  LH DAIHRG  QVIP  R  ++ + + A  RLLEP+  V I  P + +G     +  +RG V ++M + G  L  ++   PV E  GFS  +R+AT G+A        + +M +D L+      +++ +IR+RKG+K ++
Sbjct:  569 EDGPLAAEPVEGALIRLHDARLHEDAIHRGPAQVIPATRDAVHRALIDADIRLLEPIQDVRIDVPSEHMGAASGEVQGRRGRV-DDMYQEG-DLMVVEGIAPVDEMIGFSSDIRSATEGRASWNTENAGFRVM-ADNLQ-----REIIMEIRERKGMKTEL 721          
The following BLAST results are available for this feature:
BLAST of CX291648 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 100
Match NameE-valueIdentityDescription
RIA1_YEAST3.614e-1732.45Ribosome assembly protein 1 OS=Saccharomyces cerev... [more]
EF2_THEGJ3.614e-1735.22Elongation factor 2 OS=Thermococcus gammatolerans ... [more]
EF2_NANEQ3.614e-1735.48Elongation factor 2 OS=Nanoarchaeum equitans GN=fu... [more]
EF2_METTH3.614e-1729.45Elongation factor 2 OS=Methanobacterium thermoauto... [more]
EF2_THEON6.164e-1734.38Elongation factor 2 OS=Thermococcus onnurineus (st... [more]
EF2_PYRHO6.164e-1733.75Elongation factor 2 OS=Pyrococcus horikoshii GN=fu... [more]
EF2_PYRAB6.164e-1733.75Elongation factor 2 OS=Pyrococcus abyssi GN=fusA P... [more]
EF2_THESM1.373e-1633.13Elongation factor 2 OS=Thermococcus sibiricus (str... [more]
EF2_HALSA1.793e-1634.16Elongation factor 2 OS=Halobacterium salinarium GN... [more]
EF2_HALS31.793e-1634.16Elongation factor 2 OS=Halobacterium salinarum (st... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03011F09SK OF2 Citrus clementina cDNA clone C03011F09, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291648 ID=CX291648; Name=CX291648; organism=Citrus clementina; type=EST; length=714bp
GTGGGCATCGAAAGAAGGTGCGCTGGCTGAAGAGAACATGAGAGGTATCT
GCTTTGAAGTATGTGATGTTGTTCTTCACGCTGATGCCATTCACAGAGGT
GGTGGTCAAGTCATTCCTACTGCTAGGAGGGTCATATATGCTTCCCAGCT
CACAGCCAAGCCCAGGCTTCTTGAGCCTGTCTACATGGTCGAAATACAGG
CTCCCGAGCAGGCCCTTGGTGGTATTTACAGTGTTCTCAATCAGAAACGT
GGTCACGTGTTCGAGGAAATGCAGAGACCTGGTACCCCCCTTTACAACAT
CAAGGCTTACCTTCCCGTCATCGAGTCCTTTGGATTCTCAGGCACTTTGA
GGGCTGCAACGTCAGGACAGGCCTTCCCACAATGTGTGTTTGATCACTGG
GACATGATGTCATCCGATCCACTGGAGCCTGGTACACAGGCTGCACAGCT
TGTTGCTGATATCAGGAAGAGGAAGGGCTTGAAGGAGCAAATGACACCAC
TATCTGAGTTTGAGGACAAGCTGTAAACATTTCGTCTTGACATCAAGGGT
GAGATTGCGCAGCTTGTTGCTGATATCAGGAAGAGGGAGCAAATGACACC
GCTATCCGAGTAGAGGACGAGCTGTAAACATTTCATCTTGACATCAAGGG
TGAGATTGCGCAGCAATATTTTTTGCTGATGCTTATTTTTGTTTCAAGTT
TTTCAATATCCTCA
back to top