CX291650

Overview
NameCX291650
Unique NameCX291650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHRS4_PONAB (Dehydrogenase/reductase SDR family member 4 OS=Pongo abelii GN=DHRS4 PE=2 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 48/141 (34.04%), Postives = 78/141 (55.32%), Query Frame = -3
Query:  309 WQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK--ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 692
            W   +D+N+    L T+           G ++ ++S+     + G + Y+ +K  ++GLTKT+A E A RNI VN +APG I +  +  L  D EK+  + E + + R G+PE+ AG+V FL  +  A YITG+ + + GG
Sbjct:  116 WDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLC-SEDASYITGETVVVGGG 255          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHRS4_HUMAN (Dehydrogenase/reductase SDR family member 4 OS=Homo sapiens GN=DHRS4 PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 48/141 (34.04%), Postives = 78/141 (55.32%), Query Frame = -3
Query:  309 WQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK--ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 692
            W   +D+N+    L T+           G ++ ++S+     + G + Y+ +K  ++GLTKT+A E A RNI VN +APG I +  +  L  D EK+  + E + + R G+PE+ AG+V FL  +  A YITG+ + + GG
Sbjct:  116 WDKTLDINVKAPALMTKAVVPEMEKRGGGSVVIVSSIAAFSPSPGFSPYNVSKTALLGLTKTLAIELAPRNIRVNCLAPGLIKTSFSRMLWMDKEKEESMKETLRIRRLGEPEDCAGIVSFLC-SEDASYITGETVVVGGG 255          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: BUDC_KLEPN (Acetoin(diacetyl) reductase OS=Klebsiella pneumoniae GN=budC PE=1 SV=2)

HSP 1 Score: 84.3445 bits (207), Expect = 6.788e-16
Identity = 50/124 (40.32%), Postives = 71/124 (57.26%), Query Frame = -3
Query:  303 GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEK-----------KILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 641
            G+IIN  S  G VGN   A YS++K  V GLT+T A++ A   I VN   PG + + M A++   + +           +  ++I LGR  +PE+VA  V +LA +P + Y+TGQ L IDGGMV
Sbjct:  132 GKIINACSQAGHVGNPELAVYSSSKFAVRGLTQTAARDLAPLGITVNGYCPGIVKTPMWAEIDRQVSEAAGKPLGYGTAEFAKRITLGRLSEPEDVAACVSYLA-SPDSDYMTGQSLLIDGGMV 254          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHG_BACSU (Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gdh PE=2 SV=2)

HSP 1 Score: 83.9593 bits (206), Expect = 8.866e-16
Identity = 54/148 (36.49%), Postives = 82/148 (55.41%), Query Frame = -3
Query:  306 MKKSQWQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK--ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 707
            M    W  VI  NLTG FL ++            G +IN++SV  ++      +Y+A+K G+  +T+T+A EYA + I VN I PG I + + A+   D ++K  +   IP+G  G+PEE+A +  +LA +  A Y+TG  L  DGGM
Sbjct:  104 MPLKDWDKVIGTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEVIPWPLFVHYAASKGGIKLMTETLALEYAPKGIRVNNIGPGAINTPINAEKFADPKQKADVESMIPMGYIGEPEEIAAVAAWLA-SKEASYVTGITLFADGGM 250          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: UCPA_ECO57 (Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN=ucpA PE=3 SV=2)

HSP 1 Score: 82.8037 bits (203), Expect = 1.975e-15
Identity = 55/147 (37.41%), Postives = 79/147 (53.74%), Query Frame = -3
Query:  300 IDLNLTGVFLCTQ-----------GRIINIASVVG-LVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLG-----EDLEKKILE---KIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 680
            ID+N+ GV+  T+           GRI+ ++SV G +V + G+  Y+  KA ++GLTK++A EYA   I VNAI PG++ + M   +      ED E  + E    IPL R   P EV  L  FLA +  + Y+TG    IDGG  +
Sbjct:  110 IDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPLRRLADPLEVGELAAFLA-SDESSYLTGTQNVIDGGSTL 255          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: YXJF_BACSU (Uncharacterized oxidoreductase yxjF OS=Bacillus subtilis GN=yxjF PE=3 SV=2)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 53/123 (43.09%), Postives = 70/123 (56.91%), Query Frame = -3
Query:  309 GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEK-------KILEK-----IPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 641
            GRIINIASV GLVG  G++ Y++AK GVIGLTK  A E A   I VNA+ PG++ + +      DL K        +LE+     +P  R    +E+A    FLA   A G +TGQ + +DGG
Sbjct:  132 GRIINIASVNGLVGFAGKSAYNSAKHGVIGLTKVGALEGAPHGITVNALCPGYVDTQLVRNQLSDLSKTRNVPYDSVLEQVIFPLVPQKRLLSVKEIADYAVFLASEKAKG-VTGQAVVLDGG 253          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: UCPA_SALTY (Oxidoreductase ucpA OS=Salmonella typhimurium GN=ucpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = -3
Query:  300 IDLNLTGVFLCTQ-----------GRIINIASVVG-LVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLG--------EDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 680
            ID+N+ GV+  T+           GRI+ ++SV G +V + G+  Y+ +KA ++GLTK++A EYA   I VNAI PG++ + M   +         E +  ++ + IPL R   P EV  L  FLA +  + Y+TG    IDGG  +
Sbjct:  110 IDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPLRRLADPLEVGELAAFLA-SDESSYLTGTQNVIDGGSTL 255          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: UCPA_SALTI (Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE=3 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 52/147 (35.37%), Postives = 80/147 (54.42%), Query Frame = -3
Query:  300 IDLNLTGVFLCTQ-----------GRIINIASVVG-LVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLG--------EDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 680
            ID+N+ GV+  T+           GRI+ ++SV G +V + G+  Y+ +KA ++GLTK++A EYA   I VNAI PG++ + M   +         E +  ++ + IPL R   P EV  L  FLA +  + Y+TG    IDGG  +
Sbjct:  110 IDINIKGVWNVTKAVLPEMIKRKDGRIVMMSSVTGDMVADPGETAYALSKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPDDPESVLTEMAKAIPLRRLADPLEVGELAAFLA-SDESSYLTGTQNVIDGGSTL 255          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: TRN2_DATST (Tropinone reductase 2 OS=Datura stramonium GN=TR2 PE=1 SV=1)

HSP 1 Score: 82.4185 bits (202), Expect = 2.580e-15
Identity = 44/119 (36.97%), Postives = 73/119 (61.34%), Query Frame = -3
Query:  303 QGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK-----ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 644
            +G ++ I+SV G +    +A Y A K  +  LT+ +A E+A  NI VN + PG IA+ +     +D E+K     ++++  L R G+P+E+A +V FL   PAA Y+TGQ++ +DGG++
Sbjct:  138 RGNVVFISSVSGALAVPYEAVYGATKGAMDQLTRCLAFEWAKDNIRVNGVGPGVIATSLVEMTIQDPEQKENLNKLIDRCALRRMGEPKELAAMVAFLCF-PAASYVTGQIIYVDGGLM 255          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: UCPA_ECOLI (Oxidoreductase ucpA OS=Escherichia coli (strain K12) GN=ucpA PE=1 SV=3)

HSP 1 Score: 82.0333 bits (201), Expect = 3.369e-15
Identity = 54/147 (36.73%), Postives = 79/147 (53.74%), Query Frame = -3
Query:  300 IDLNLTGVFLCTQ-----------GRIINIASVVG-LVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLG-----EDLEKKILE---KIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 680
            ID+N+ GV+  T+           GRI+ ++SV G +V + G+  Y+  KA ++GLTK++A EYA   I VNAI PG++ + M   +      ED E  + E    IP+ R   P EV  L  FLA +  + Y+TG    IDGG  +
Sbjct:  110 IDINIKGVWNVTKAVLPEMIARKDGRIVMMSSVTGDMVADPGETAYALTKAAIVGLTKSLAVEYAQSGIRVNAICPGYVRTPMAESIARQSNPEDPESVLTEMAKAIPMRRLADPLEVGELAAFLA-SDESSYLTGTQNVIDGGSTL 255          
The following BLAST results are available for this feature:
BLAST of CX291650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
DHRS4_PONAB6.788e-1634.04Dehydrogenase/reductase SDR family member 4 OS=Pon... [more]
DHRS4_HUMAN6.788e-1634.04Dehydrogenase/reductase SDR family member 4 OS=Hom... [more]
BUDC_KLEPN6.788e-1640.32Acetoin(diacetyl) reductase OS=Klebsiella pneumoni... [more]
DHG_BACSU8.866e-1636.49Glucose 1-dehydrogenase OS=Bacillus subtilis GN=gd... [more]
UCPA_ECO571.975e-1537.41Oxidoreductase ucpA OS=Escherichia coli O157:H7 GN... [more]
YXJF_BACSU2.580e-1543.09Uncharacterized oxidoreductase yxjF OS=Bacillus su... [more]
UCPA_SALTY2.580e-1535.37Oxidoreductase ucpA OS=Salmonella typhimurium GN=u... [more]
UCPA_SALTI2.580e-1535.37Oxidoreductase ucpA OS=Salmonella typhi GN=ucpA PE... [more]
TRN2_DATST2.580e-1536.97Tropinone reductase 2 OS=Datura stramonium GN=TR2 ... [more]
UCPA_ECOLI3.369e-1536.73Oxidoreductase ucpA OS=Escherichia coli (strain K1... [more]

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Properties
Property NameValue
Genbank descriptionC03011F11SK OF2 Citrus clementina cDNA clone C03011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291650 ID=CX291650; Name=CX291650; organism=Citrus clementina; type=EST; length=709bp
TTTTTTTTTTTGAAAGCAATTTGAAGACAACATATAGCAGAGTATGTATC
ACCCAAAAACTACATTCCATAATGCCAATTTGAAGTACAACAAATGTTAC
GCGCCTCATGTTTGGTTTTTGCAACATGCTTAGCTTAAATTCTACCAAAA
CTTACCTGAATTTTTATTTCATAACAACACTTTGGCAACATTTCCTCATA
GGATCATAAAGCAGACAAAGTTTCAACCCAGTCGATCTTACATATGAGAG
CTACAGGTCAGAACTGAAACTAAACCAGGCAGAATGGGTCACTGACCTAC
ATAACCATTCCTCCGTCAATAGTAAGCACCTGTCCAGTAATGTAACCGGC
AGCGGGATTGAGGGCCAAGAATTCCACCAGTCCAGCAACTTCTTCAGGTT
GGCCATACCTTCCTAAGGGGATTTTCTCCAAGATCTTCTTTTCTAGGTCT
TCGCCAAGCTTGGCGGTCATATCAGACGCGATGAATCCTGGTGCAATAGC
ATTGACATTAATGTTTCTGCTTGCATATTCCTTTGCAACAGTTTTTGTCA
GGCCAATAACACCTGCTTTTGCAGCACTGTAATTGGCTTGGCCAATATTT
CCAACCAGACCAACAACTGATGCTATATTGATTATTCTTCCCTGTGTACA
CAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCATTGTGACT
TCTTCATTC
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