CX291650

Overview
NameCX291650
Unique NameCX291650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DECR2_HUMAN (Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapiens GN=DECR2 PE=1 SV=1)

HSP 1 Score: 67.781 bits (164), Expect = 6.575e-11
Identity = 49/143 (34.27%), Postives = 78/143 (54.55%), Query Frame = -3
Query:  309 WQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIA-SDMTAKLG---EDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 692
            ++ V+D++ +G F  ++           G I+NI + +G  G   Q +  +AKA V  +T+ +A E+  +NI VN++APG I+ ++   +LG     L  K+    PL R G   E+A  V +LA +P A Y+TG VL  DGG
Sbjct:  130 FKTVMDIDTSGTFNVSRVLYEKFFRDHGGVIVNITATLGNRGQALQVHAGSAKAAVDAMTRHLAVEWGPQNIRVNSLAPGPISGTEGLRRLGGPQASLSTKVTAS-PLQRLGNKTEIAHSVLYLA-SPLASYVTGAVLVADGG 270          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: YWFH_BACSU (Bacilysin biosynthesis oxidoreductase ywfH OS=Bacillus subtilis GN=ywfH PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 45/122 (36.89%), Postives = 60/122 (49.18%), Query Frame = -3
Query:  309 GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK-----------ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 641
            GRIINI   +           S   A +I  +K ++ + A  NI VN + PGFIA+D   +  E++ KK           I   IP+ R G  EE A L  FLA +  A YITGQ ++ DGG
Sbjct:  134 GRIINIVGNLWKEPGANMFTNSMMNAALINASKNISIQLAPHNITVNCLNPGFIATDRYHQFVENVMKKNSISKQKAEEQIASGIPMKRVGSAEETAALAAFLA-SEEASYITGQQISADGG 254          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHRS2_HUMAN (Dehydrogenase/reductase SDR family member 2 OS=Homo sapiens GN=DHRS2 PE=1 SV=3)

HSP 1 Score: 67.3958 bits (163), Expect = 8.587e-11
Identity = 37/113 (32.74%), Postives = 62/113 (54.87%), Query Frame = -3
Query:  312 QGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL--GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDG 644
            +G +I ++S+      +    Y+ +K  ++GLT+T+A E A ++I VN + PG I +D +      E L K   E   L R G+ E+ AG+V FL  +P A Y+ G+ + + G
Sbjct:  142 RGAVILVSSIAAYNPVVALGVYNVSKTALLGLTRTLALELAPKDIRVNCVVPGIIKTDFSKVFHGNESLWKNFKEHHQLQRIGESEDCAGIVSFLC-SPDASYVNGENIAVAG 253          
The following BLAST results are available for this feature:
BLAST of CX291650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
DECR2_HUMAN6.575e-1134.27Peroxisomal 2,4-dienoyl-CoA reductase OS=Homo sapi... [more]
YWFH_BACSU8.587e-1136.89Bacilysin biosynthesis oxidoreductase ywfH OS=Baci... [more]
DHRS2_HUMAN8.587e-1132.74Dehydrogenase/reductase SDR family member 2 OS=Hom... [more]

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Properties
Property NameValue
Genbank descriptionC03011F11SK OF2 Citrus clementina cDNA clone C03011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291650 ID=CX291650; Name=CX291650; organism=Citrus clementina; type=EST; length=709bp
TTTTTTTTTTTGAAAGCAATTTGAAGACAACATATAGCAGAGTATGTATC
ACCCAAAAACTACATTCCATAATGCCAATTTGAAGTACAACAAATGTTAC
GCGCCTCATGTTTGGTTTTTGCAACATGCTTAGCTTAAATTCTACCAAAA
CTTACCTGAATTTTTATTTCATAACAACACTTTGGCAACATTTCCTCATA
GGATCATAAAGCAGACAAAGTTTCAACCCAGTCGATCTTACATATGAGAG
CTACAGGTCAGAACTGAAACTAAACCAGGCAGAATGGGTCACTGACCTAC
ATAACCATTCCTCCGTCAATAGTAAGCACCTGTCCAGTAATGTAACCGGC
AGCGGGATTGAGGGCCAAGAATTCCACCAGTCCAGCAACTTCTTCAGGTT
GGCCATACCTTCCTAAGGGGATTTTCTCCAAGATCTTCTTTTCTAGGTCT
TCGCCAAGCTTGGCGGTCATATCAGACGCGATGAATCCTGGTGCAATAGC
ATTGACATTAATGTTTCTGCTTGCATATTCCTTTGCAACAGTTTTTGTCA
GGCCAATAACACCTGCTTTTGCAGCACTGTAATTGGCTTGGCCAATATTT
CCAACCAGACCAACAACTGATGCTATATTGATTATTCTTCCCTGTGTACA
CAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCATTGTGACT
TCTTCATTC
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