CX291650

Overview
NameCX291650
Unique NameCX291650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: NODG_RHIS3 (Nodulation protein G OS=Rhizobium sp. (strain N33) GN=nodG PE=3 SV=1)

HSP 1 Score: 130.954 bits (328), Expect = 6.324e-30
Identity = 71/147 (48.30%), Postives = 95/147 (64.63%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M  + W  V+++NLT VF  T+           GRIINI SVVG+ GN GQ NY A+KAG+IG +K++A+E A+RNI VN +APGFI S MT KL +  ++ I+  IP  R G   EVA  V +LA N AA Y+TGQ + ++GG+ M
Sbjct:   99 MSDADWDTVLEVNLTAVFRLTRELTHPMMRRRHGRIINITSVVGVTGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNDKQKEAIMAAIPTRRMGTSVEVASAVAYLASNEAA-YVTGQTIHVNGGLAM 244          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHB8_CANFA (Estradiol 17-beta-dehydrogenase 8 OS=Canis familiaris GN=HSD17B8 PE=3 SV=1)

HSP 1 Score: 129.028 bits (323), Expect = 2.403e-29
Identity = 68/148 (45.95%), Postives = 93/148 (62.84%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M +  W  VI +NL G+FL TQ            G IINI+S+VG VGN+GQ NY+A+KAGVIGLT+T A+E     I  N++ PGFI + MT K+ + +  K++  IP+G  G PE+VA  V FLA +  +GYITG  + + GG+ M
Sbjct:  113 MSEDDWDRVIAVNLKGIFLVTQAAAQALVSSGCRGSIINISSIVGKVGNVGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFITTPMTQKVPQKVLDKVIGMIPMGHLGDPEDVADAVTFLA-SEDSGYITGASVEVTGGLYM 259          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: NODG_RHIME (Nodulation protein G OS=Rhizobium meliloti GN=nodG PE=3 SV=1)

HSP 1 Score: 127.487 bits (319), Expect = 6.992e-29
Identity = 69/147 (46.94%), Postives = 94/147 (63.95%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M    W  V+++NLT +F  T+           GRIIN+ SV G +GN GQ NY A+KAG+IG +K++A+E A+RNI VN +APGFI S MT KL    ++KI+  IP+ R G   EVA  V +LA + AA Y+TGQ + ++GGM M
Sbjct:   99 MADPDWDIVLEVNLTAMFRLTREITQQMIRRRNGRIINVTSVAGAIGNPGQTNYCASKAGMIGFSKSLAQEIATRNITVNCVAPGFIESAMTDKLNHKQKEKIMVAIPIHRMGTGTEVASAVAYLASDHAA-YVTGQTIHVNGGMAM 244          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: PHBB_RHIME (Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN=phbB PE=3 SV=1)

HSP 1 Score: 124.405 bits (311), Expect = 5.919e-28
Identity = 70/145 (48.28%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  309 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED-LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 707
            M   QW +VI  NLTGVF  T            GRI+NI+S+ G  G +GQ NYSAAKAG +GLTK +A+E A++ I VNAI PG+I ++M   + E  L ++I+ +IP+GR G+PEEVA  V FLA +  AG+ITG  ++ +GG
Sbjct:   94 MTPEQWGEVIGTNLTGVFNMTHPLWSGMRDRGFGRIVNISSINGQKGQMGQVNYSAAKAGDLGLTKALAQEGAAKGITVNAICPGYIGTEMVRAVPEKVLNERIIPQIPVGRLGEPEEVARCVVFLA-SDDAGFITGSTISANGG 237          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: PHBB_ZOORA (Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=phbB PE=3 SV=1)

HSP 1 Score: 123.635 bits (309), Expect = 1.010e-27
Identity = 67/145 (46.21%), Postives = 96/145 (66.21%), Query Frame = -3
Query:  309 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED-LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 707
            M   QW  VI+ NLTG+F  T            GRI+NI+S+ G  G +GQANYSAAKAG +G TK +A+E A++ I VNAI PG+I ++M   + E  L ++I+ +IP+GR G+P+E+A +V FLA +  AG+ITG  ++ +GG
Sbjct:   94 MTPDQWNAVINTNLTGLFNMTHPVWSGMRDRSFGRIVNISSINGQKGQMGQANYSAAKAGDLGFTKALAQEGAAKGITVNAICPGYIGTEMVRAIPEKVLNERIIPQIPVGRLGEPDEIARIVVFLA-SDEAGFITGSTISANGG 237          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: PHAB_ACISR (Acetoacetyl-CoA reductase OS=Acinetobacter sp. (strain RA3849) GN=phaB PE=3 SV=1)

HSP 1 Score: 123.25 bits (308), Expect = 1.319e-27
Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M   QW  VID NL  +F  TQ           GRI+NI+SV GL G  GQANYSA+KAG+IG TK +A+E A  NI VN +APG+ A+ M   + ED+ K I  +IPL R   P E+A  V +L     A Y+TG+ L+I+GG+ M
Sbjct:  102 MSYEQWSQVIDTNLKTLFTVTQPVFNKMLEQKSGRIVNISSVNGLKGQFGQANYSASKAGIIGFTKALAQEGARSNICVNVVAPGYTATPMVTAMREDVIKSIEAQIPLQRLAAPAEIAAAVMYLVSEHGA-YVTGETLSINGGLYM 247          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: FABG_BUCAI (3-oxoacyl-[acyl-carrier-protein] reductase OS=Buchnera aphidicola subsp. Acyrthosiphon pisum GN=fabG PE=3 SV=1)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 69/147 (46.94%), Postives = 89/147 (60.54%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCT-----------QGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            MK ++W DVI  NL+ VF              QGRII I SV+   GN GQ NYSA+K+G+IG  K++A E AS+ I VN ++PG I ++ T KL     +K L  IP+ R+GQ EEVA  V FLA +  A YITG  L ++GGM M
Sbjct:   98 MKSTEWDDVIKTNLSSVFHLVKSVIRSMIKKRQGRIITIGSVIAYTGNKGQVNYSASKSGLIGFHKSLALEVASKGITVNIVSPGLIKTNFTEKLNSIQYQKYLSNIPMKRFGQKEEVADAVIFLA-SKKASYITGHTLHVNGGMYM 243          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHB8_PIG (Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN=HSD17B8 PE=3 SV=2)

HSP 1 Score: 122.094 bits (305), Expect = 2.938e-27
Identity = 65/148 (43.92%), Postives = 92/148 (62.16%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M +  W  VI +NL G+FL TQ            G IINI+S++G VGN+GQ NY+A+KAGVIGLT+ VA+E     I  N++ PGFI + M  K+ + +  K++  IP+G  G P +VA +V FLA +  +GYITG  + + GG+ M
Sbjct:  113 MSEDDWDKVIAVNLKGIFLVTQAAAQALVSSGCPGSIINISSIIGKVGNMGQTNYAASKAGVIGLTQAVARELGRYRIRCNSVLPGFIKTPMAQKVPQKVLDKVVGMIPMGHLGGPPDVADVVAFLA-SEDSGYITGASVEVTGGLFM 259          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHB8_CALJA (Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Callithrix jacchus GN=HSD17B8 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 66/132 (50.00%), Postives = 85/132 (64.39%), Query Frame = -3
Query:  333 WQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITG 692
            W  VI +NL G FL TQ            G IINI+S+VG VGN+GQ NY+A+KAGVIGLT+T A+E     I  N++ PGFIA+ MT K+ + +  KI   IP+G  G PE+VA +V FLA +  +GYITG
Sbjct:    2 WDKVIAVNLKGTFLVTQAAGQALVSSGCSGSIINISSIVGKVGNMGQTNYAASKAGVIGLTQTAARELGRHGIRCNSVLPGFIATPMTQKVPQKVMNKITGMIPMGHLGDPEDVADVVAFLA-SEDSGYITG 132          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: CBR4_XENLA (Carbonyl reductase family member 4 OS=Xenopus laevis GN=cbr4 PE=2 SV=1)

HSP 1 Score: 120.939 bits (302), Expect = 6.545e-27
Identity = 66/121 (54.55%), Postives = 84/121 (69.42%), Query Frame = -3
Query:  306 LTGVFLCTQGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 668
            L G+     G I+NI S+VG  GNIGQ+ Y A+K G+IG +K++AKE A RNI VN +APGFI +DMT+ L ED   K+   IPLGR+G+PEEVA  V FL  +P   YITG VL +DGG+
Sbjct:  118 LKGMIQQQGGSIVNIGSIVGHKGNIGQSIYGASKEGLIGFSKSLAKEVAKRNIRVNVVAPGFIRTDMTSDLKEDSLNKM---IPLGRFGEPEEVAQSVLFLLESP---YITGHVLVVDGGL 232          
The following BLAST results are available for this feature:
BLAST of CX291650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
NODG_RHIS36.324e-3048.30Nodulation protein G OS=Rhizobium sp. (strain N33)... [more]
DHB8_CANFA2.403e-2945.95Estradiol 17-beta-dehydrogenase 8 OS=Canis familia... [more]
NODG_RHIME6.992e-2946.94Nodulation protein G OS=Rhizobium meliloti GN=nodG... [more]
PHBB_RHIME5.919e-2848.28Acetoacetyl-CoA reductase OS=Rhizobium meliloti GN... [more]
PHBB_ZOORA1.010e-2746.21Acetoacetyl-CoA reductase OS=Zoogloea ramigera GN=... [more]
PHAB_ACISR1.319e-2746.94Acetoacetyl-CoA reductase OS=Acinetobacter sp. (st... [more]
FABG_BUCAI2.938e-2746.943-oxoacyl-[acyl-carrier-protein] reductase OS=Buch... [more]
DHB8_PIG2.938e-2743.92Estradiol 17-beta-dehydrogenase 8 OS=Sus scrofa GN... [more]
DHB8_CALJA6.545e-2750.00Estradiol 17-beta-dehydrogenase 8 (Fragment) OS=Ca... [more]
CBR4_XENLA6.545e-2754.55Carbonyl reductase family member 4 OS=Xenopus laev... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03011F11SK OF2 Citrus clementina cDNA clone C03011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291650 ID=CX291650; Name=CX291650; organism=Citrus clementina; type=EST; length=709bp
TTTTTTTTTTTGAAAGCAATTTGAAGACAACATATAGCAGAGTATGTATC
ACCCAAAAACTACATTCCATAATGCCAATTTGAAGTACAACAAATGTTAC
GCGCCTCATGTTTGGTTTTTGCAACATGCTTAGCTTAAATTCTACCAAAA
CTTACCTGAATTTTTATTTCATAACAACACTTTGGCAACATTTCCTCATA
GGATCATAAAGCAGACAAAGTTTCAACCCAGTCGATCTTACATATGAGAG
CTACAGGTCAGAACTGAAACTAAACCAGGCAGAATGGGTCACTGACCTAC
ATAACCATTCCTCCGTCAATAGTAAGCACCTGTCCAGTAATGTAACCGGC
AGCGGGATTGAGGGCCAAGAATTCCACCAGTCCAGCAACTTCTTCAGGTT
GGCCATACCTTCCTAAGGGGATTTTCTCCAAGATCTTCTTTTCTAGGTCT
TCGCCAAGCTTGGCGGTCATATCAGACGCGATGAATCCTGGTGCAATAGC
ATTGACATTAATGTTTCTGCTTGCATATTCCTTTGCAACAGTTTTTGTCA
GGCCAATAACACCTGCTTTTGCAGCACTGTAATTGGCTTGGCCAATATTT
CCAACCAGACCAACAACTGATGCTATATTGATTATTCTTCCCTGTGTACA
CAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCATTGTGACT
TCTTCATTC
back to top