CX291650

Overview
NameCX291650
Unique NameCX291650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: KDUD_ECOLI (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=kduD PE=3 SV=2)

HSP 1 Score: 113.235 bits (282), Expect = 1.365e-24
Identity = 59/145 (40.69%), Postives = 95/145 (65.52%), Query Frame = -3
Query:  309 KSQWQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEK--KILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 701
            +  W DV++LN+  VF  +Q            G+IINIAS++   G I   +Y+A+K+GV+G+T+ +A E+A  NINVNAIAPG++A++ T +L  D ++  +IL++IP GR+G P ++ G + FLA + A+ Y+ G  + +DGG
Sbjct:  106 EKDWDDVMNLNIKSVFFMSQAAAKHFIAQGNGGKIINIASMLSFQGGIRVPSYTASKSGVMGVTRLMANEWAKHNINVNAIAPGYMATNNTQQLRADEQRSAEILDRIPAGRWGLPSDLMGPIVFLA-SSASDYVNGYTIAVDGG 249          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: CBR4_RAT (Carbonyl reductase family member 4 OS=Rattus norvegicus GN=Cbr4 PE=2 SV=1)

HSP 1 Score: 112.464 bits (280), Expect = 2.328e-24
Identity = 59/112 (52.68%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  306 GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 641
            G I+N+ S++GL GN+GQA YSA K G+IG ++++AKE A + I VN +APGFI +DMT  L E+  KK    IPLGR+G+  EVA  V FL  +P   YITG VL +DGG+
Sbjct:  127 GSIVNVGSIIGLKGNVGQAAYSATKGGLIGFSRSLAKEVARKKIRVNVVAPGFIHTDMTKHLKEEHFKK---NIPLGRFGEALEVAHAVVFLLESP---YITGHVLIVDGGL 232          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: PHBB_RALEH (Acetoacetyl-CoA reductase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbB PE=3 SV=1)

HSP 1 Score: 112.079 bits (279), Expect = 3.040e-24
Identity = 59/147 (40.14%), Postives = 91/147 (61.90%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M ++ W  VID NLT +F  T+           GRI+NI+SV G  G  GQ NYS AKAG+ G T  +A+E A++ + VN ++PG+IA+DM   + +D+  KI+  IP+ R G PEE+A +  +L+ +  +G+ TG   +++GG+ M
Sbjct:  100 MTRADWDAVIDTNLTSLFNVTKQVIDGMADRGWGRIVNISSVNGQKGQFGQTNYSTAKAGLHGFTMALAQEVATKGVTVNTVSPGYIATDMVKAIRQDVLDKIVATIPVKRLGLPEEIASICAWLS-SEESGFSTGADFSLNGGLHM 245          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: Y1385_MYCBO (Uncharacterized oxidoreductase Mb1385 OS=Mycobacterium bovis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = -3
Query:  309 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 707
            M + Q+  VI ++L G +  T+           G I+N++SV G VG +GQ NYSAAKAG++G+TK  AKE A   I VNAIAPG I S MT  + + +  + L ++P+GR G+P EVA +  FLA +  + Y+TG VL + GG
Sbjct:  102 MTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLA-SDLSSYMTGTVLDVTGG 244          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: Y1350_MYCTU (Uncharacterized oxidoreductase Rv1350/MT1393 OS=Mycobacterium tuberculosis GN=fabG2 PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 63/144 (43.75%), Postives = 89/144 (61.81%), Query Frame = -3
Query:  309 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 707
            M + Q+  VI ++L G +  T+           G I+N++SV G VG +GQ NYSAAKAG++G+TK  AKE A   I VNAIAPG I S MT  + + +  + L ++P+GR G+P EVA +  FLA +  + Y+TG VL + GG
Sbjct:  102 MTEEQFDQVIAVHLKGTWNGTRLAAAIMRERKRGAIVNMSSVSGKVGMVGQTNYSAAKAGIVGMTKAAAKELAHLGIRVNAIAPGLIRSAMTEAMPQRIWDQKLAEVPMGRAGEPSEVASVAVFLA-SDLSSYMTGTVLDVTGG 244          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: PHAB_PARDE (Acetoacetyl-CoA reductase OS=Paracoccus denitrificans GN=phaB PE=3 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 64/137 (46.72%), Postives = 86/137 (62.77%), Query Frame = -3
Query:  333 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED-LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITG 707
            M   QW++VID NLTG+F  T            GRI+NI+S+ G  G  GQANYSAAKAG +G TK +A+E A   I VNAI PG+I ++M   + E  L + I+ +IP+  + +PEE+A  V FLA +  AG+ITG
Sbjct:   94 MTPQQWKEVIDTNLTGLFNMTHPVWSGMRDRKYGRIVNISSINGQKGQAGQANYSAAKAGDLGFTKALAQEGARAGITVNAICPGYIGTEMVRAIDEKVLNEGIIPQIPVAAWAEPEEIARCVVFLA-SEDAGFITG 229          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: KDUD_DICD3 (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Dickeya dadantii (strain 3937) GN=kduD PE=1 SV=1)

HSP 1 Score: 111.694 bits (278), Expect = 3.970e-24
Identity = 59/145 (40.69%), Postives = 92/145 (63.45%), Query Frame = -3
Query:  309 KSQWQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMT--AKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 701
            +  W DV++LN+  VF  +Q            G+IINIAS++   G I   +Y+A+K  V+G+T+ VA E+A  NINVNAIAPG++A++ T   +  +D  K+IL++IP GR+G P+++ G   FLA + A+ Y+ G  + +DGG
Sbjct:  106 EKNWDDVMNLNIKSVFFMSQTVARQFIKQGHGGKIINIASMLSFQGGIPVPSYTASKKRVMGITRIVANEWAKHNINVNAIAPGYMATNNTQHVRADQDRSKEILDRIPAGRWGLPQDLQGPAVFLA-SSASDYVNGYTIAVDGG 249          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: CBR4_MOUSE (Carbonyl reductase family member 4 OS=Mus musculus GN=Cbr4 PE=2 SV=2)

HSP 1 Score: 111.309 bits (277), Expect = 5.186e-24
Identity = 57/112 (50.89%), Postives = 78/112 (69.64%), Query Frame = -3
Query:  306 GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 641
            G I+N+ S++GL GN+GQ+ YSA K G++G ++++AKE A + I VN +APGFI +DMT  L E+  KK    IPLGR+G+  EVA  V FL  +P   YITG VL +DGG+
Sbjct:  127 GSIVNVGSIIGLKGNVGQSAYSATKGGLVGFSRSLAKEVARKKIRVNVVAPGFIRTDMTRHLKEEHFKK---NIPLGRFGETLEVAHAVVFLLESP---YITGHVLIVDGGL 232          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: CBR4_BOVIN (Carbonyl reductase family member 4 OS=Bos taurus GN=CBR4 PE=2 SV=1)

HSP 1 Score: 110.153 bits (274), Expect = 1.155e-23
Identity = 57/113 (50.44%), Postives = 77/113 (68.14%), Query Frame = -3
Query:  306 QGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 644
            +G I+N+ SVVGL GN GQ+ YSA+K G++G ++ +AKE A + I VN +APGFI +DMT  L E+L KK    IPLGR+G   +VA    FL  +P   Y+TG VL +DGG+
Sbjct:  127 RGSIVNVGSVVGLKGNSGQSVYSASKGGLVGFSRALAKEVAKKKIRVNVVAPGFIHTDMTKDLNEELLKK---NIPLGRFGDALDVAQAAVFLLESP---YVTGHVLVVDGGL 233          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: FABG_MYCAV (3-oxoacyl-[acyl-carrier-protein] reductase OS=Mycobacterium avium GN=fabG PE=3 SV=1)

HSP 1 Score: 109.768 bits (273), Expect = 1.509e-23
Identity = 63/147 (42.86%), Postives = 88/147 (59.86%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M + ++ +VI+ NLTG F  TQ           GRII I SV G+ G   QANY+AAKAG+IG+ +++++E +   +  N +APG+I ++MT  L E ++   LE IP  R G   EV G V FLA +  A YI G V+ +DGGM M
Sbjct:  108 MTEERFTEVINANLTGAFRVTQRAARSMQKKRFGRIIYIGSVSGMWGIGNQANYAAAKAGLIGMARSISRELSKAGVTANVVAPGYIDTEMTRALDERIQAGALEFIPAKRVGTAAEVPGAVSFLA-SEDASYIAGAVIPVDGGMGM 253          
The following BLAST results are available for this feature:
BLAST of CX291650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
KDUD_ECOLI1.365e-2440.692-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=E... [more]
CBR4_RAT2.328e-2452.68Carbonyl reductase family member 4 OS=Rattus norve... [more]
PHBB_RALEH3.040e-2440.14Acetoacetyl-CoA reductase OS=Ralstonia eutropha (s... [more]
Y1385_MYCBO3.970e-2443.75Uncharacterized oxidoreductase Mb1385 OS=Mycobacte... [more]
Y1350_MYCTU3.970e-2443.75Uncharacterized oxidoreductase Rv1350/MT1393 OS=My... [more]
PHAB_PARDE3.970e-2446.72Acetoacetyl-CoA reductase OS=Paracoccus denitrific... [more]
KDUD_DICD33.970e-2440.692-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=D... [more]
CBR4_MOUSE5.186e-2450.89Carbonyl reductase family member 4 OS=Mus musculus... [more]
CBR4_BOVIN1.155e-2350.44Carbonyl reductase family member 4 OS=Bos taurus G... [more]
FABG_MYCAV1.509e-2342.863-oxoacyl-[acyl-carrier-protein] reductase OS=Myco... [more]

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Properties
Property NameValue
Genbank descriptionC03011F11SK OF2 Citrus clementina cDNA clone C03011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291650 ID=CX291650; Name=CX291650; organism=Citrus clementina; type=EST; length=709bp
TTTTTTTTTTTGAAAGCAATTTGAAGACAACATATAGCAGAGTATGTATC
ACCCAAAAACTACATTCCATAATGCCAATTTGAAGTACAACAAATGTTAC
GCGCCTCATGTTTGGTTTTTGCAACATGCTTAGCTTAAATTCTACCAAAA
CTTACCTGAATTTTTATTTCATAACAACACTTTGGCAACATTTCCTCATA
GGATCATAAAGCAGACAAAGTTTCAACCCAGTCGATCTTACATATGAGAG
CTACAGGTCAGAACTGAAACTAAACCAGGCAGAATGGGTCACTGACCTAC
ATAACCATTCCTCCGTCAATAGTAAGCACCTGTCCAGTAATGTAACCGGC
AGCGGGATTGAGGGCCAAGAATTCCACCAGTCCAGCAACTTCTTCAGGTT
GGCCATACCTTCCTAAGGGGATTTTCTCCAAGATCTTCTTTTCTAGGTCT
TCGCCAAGCTTGGCGGTCATATCAGACGCGATGAATCCTGGTGCAATAGC
ATTGACATTAATGTTTCTGCTTGCATATTCCTTTGCAACAGTTTTTGTCA
GGCCAATAACACCTGCTTTTGCAGCACTGTAATTGGCTTGGCCAATATTT
CCAACCAGACCAACAACTGATGCTATATTGATTATTCTTCCCTGTGTACA
CAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCATTGTGACT
TCTTCATTC
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