CX291650

Overview
NameCX291650
Unique NameCX291650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: CBR4_HUMAN (Carbonyl reductase family member 4 OS=Homo sapiens GN=CBR4 PE=1 SV=3)

HSP 1 Score: 108.997 bits (271), Expect = 2.574e-23
Identity = 57/112 (50.89%), Postives = 77/112 (68.75%), Query Frame = -3
Query:  306 GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 641
            G I+N+ S+VGL GN GQ+ YSA+K G++G ++ +AKE A + I VN +APGF+ +DMT  L E+  KK    IPLGR+G+  EVA  V FL  +P   YITG VL +DGG+
Sbjct:  128 GSIVNVGSIVGLKGNSGQSVYSASKGGLVGFSRALAKEVARKKIRVNVVAPGFVHTDMTKDLKEEHLKK---NIPLGRFGETIEVAHAVVFLLESP---YITGHVLVVDGGL 233          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: KDUD_BACSU (2-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=Bacillus subtilis GN=kduD PE=3 SV=1)

HSP 1 Score: 106.301 bits (264), Expect = 1.668e-22
Identity = 58/144 (40.28%), Postives = 90/144 (62.50%), Query Frame = -3
Query:  309 KSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK--ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 701
            +  WQ V+++NL  +F+ TQ           G+IINIAS++   G I    Y+A+K  V GLTK+ A E+A+  I VNAIAPG+I++  T  + +D ++   IL++IP GR+GQ +++ G   FLA + A+ Y+ G +L +DGG
Sbjct:  108 EENWQHVLNVNLNSLFILTQLAGRHMLKRGHGKIINIASLLSFQGGILVPAYTASKHAVAGLTKSFANEWAASGIQVNAIAPGYISTANTKPIRDDEKRNEDILKRIPAGRWGQADDIGGTAVFLA-SRASDYVNGHILAVDGG 250          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: FABG_AGGAC (3-oxoacyl-[acyl-carrier-protein] reductase OS=Aggregatibacter actinomycetemcomitans GN=fabG PE=3 SV=1)

HSP 1 Score: 104.76 bits (260), Expect = 4.854e-22
Identity = 63/142 (44.37%), Postives = 83/142 (58.45%), Query Frame = -3
Query:  306 WQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLE-KKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 692
            W  V+  NL G +                GRI+ I SV GL+GN GQ NYSA+KAG+IG  K +A E A R I VN +APG I +D+   L E++   +IL+ IP GR G PEEVA  V FL +   A Y+T QV+ ++GG+
Sbjct:  104 WDRVLRTNLDGFYNVLHPIMMPMIRRRKAGRIVCITSVSGLIGNRGQVNYSASKAGIIGAAKALAVELAKRKITVNCVAPGLIDTDI---LDENVPIDEILKMIPAGRMGDPEEVAHAVNFL-MGEKAAYVTRQVIAVNGGL 241          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHKR_STRCM (Monensin polyketide synthase putative ketoacyl reductase OS=Streptomyces cinnamonensis PE=3 SV=1)

HSP 1 Score: 104.375 bits (259), Expect = 6.339e-22
Identity = 64/153 (41.83%), Postives = 82/153 (53.59%), Query Frame = -3
Query:  306 WQDVIDLNLTGVFLCTQ-------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL-----------GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 692
            W DVID NL  VF  T+             GRIIN+AS  G  G +  A YSA+K GV+G TK +  E A   I VNA+ PG++ + M  ++            E +  K   KIPLGRY  PEEVAGL+ +LA + AA  IT Q L + GG+
Sbjct:  107 WDDVIDTNLNSVFRMTRAVLTTGGMRTRERGRIINVASTAGKQGVVLGAPYSASKHGVVGFTKALGNELAPTGITVNAVCPGYVETPMAQRVRQGYAAAYDTTEEAILTKFQAKIPLGRYSTPEEVAGLIGYLASDTAAS-ITSQALNVCGGL 258          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: ACT3_STRCO (Putative ketoacyl reductase OS=Streptomyces coelicolor GN=actIII PE=1 SV=1)

HSP 1 Score: 102.449 bits (254), Expect = 2.409e-21
Identity = 60/153 (39.22%), Postives = 83/153 (54.25%), Query Frame = -3
Query:  306 WQDVIDLNLTGVFLCTQ-------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL-----------GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 692
            W DV++ NLTGVF  T+             GRI+NIAS  G  G +  A YSA+K GV+G TK +  E A   I VNA+ PGF+ + M A +            E+   +I  ++P+GRY QP EVA +V +L + P A  +T Q L + GG+
Sbjct:  107 WLDVVETNLTGVFRVTKQVLKAGGMLERGTGRIVNIASTGGKQGVVHAAPYSASKHGVVGFTKALGLELARTGITVNAVCPGFVETPMAASVREHYSDIWEVSTEEAFDRITARVPIGRYVQPSEVAEMVAYL-IGPGAAAVTAQALNVCGGL 258          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: HCDS_XANP2 (2-(S)-hydroxypropyl-CoM dehydrogenase OS=Xanthobacter autotrophicus (strain ATCC BAA-1158 / Py2) GN=xecE PE=1 SV=1)

HSP 1 Score: 100.908 bits (250), Expect = 7.008e-21
Identity = 58/146 (39.73%), Postives = 84/146 (57.53%), Query Frame = -3
Query:  306 WQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIA-SDMTAKL-----GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 692
            W  ++ +N+TG FL ++           G I+N  SV GLVG    A Y AAK  V+ LT+ +A +Y+ R I VN + PG +A +DM  +L       +LE + L K P+GR+G PE++A    FL L+  A ++TG VL +DGGM
Sbjct:  102 WSRIMAVNVTGTFLASKAALFGMLERGRGAIVNFGSVAGLVGIPTMAAYCAAKGAVVNLTRQMAADYSGRGIRVNVVCPGTVAGTDMGRQLLGTDCDPELEARRLAKYPMGRFGTPEDIAEAAVFL-LSTKAAFVTGSVLAVDGGM 246          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHK1_STRVN (Granaticin polyketide synthase putative ketoacyl reductase 1 OS=Streptomyces violaceoruber GN=gra-orf5 PE=3 SV=1)

HSP 1 Score: 99.3673 bits (246), Expect = 2.039e-20
Identity = 61/153 (39.87%), Postives = 82/153 (53.59%), Query Frame = -3
Query:  306 WQDVIDLNLTGVFLCTQ-------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL-----------GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 692
            W DVI  NLT VFL T+             GRIINIAS  G  G +    YSA+K GV+GLTK +  E A   I VNA+ PGF+ + M  ++            E+   +I  ++PLGRY +  EVA +VE+L  + AA  +T Q L + GG+
Sbjct:  118 WLDVITTNLTSVFLMTKEVLNAGGMLAKKRGRIINIASTGGKQGVVHAVPYSASKHGVVGLTKALGLELARTGITVNAVCPGFVETPMAERVREHYAGIWQVSEEETFDRITNRVPLGRYVETREVAAMVEYLVADDAAA-VTAQALNVCGGL 269          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHG2_BACSU (Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=ycdF PE=1 SV=2)

HSP 1 Score: 97.4413 bits (241), Expect = 7.749e-20
Identity = 57/149 (38.26%), Postives = 84/149 (56.38%), Query Frame = -3
Query:  300 MKKSQWQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL-GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 707
            M    WQ VID+N+TG FL  +            G ++NI+SV   +       YS +K G+  +T+T+A  YA + I VNAIAPG IA++       E+  +K L+KIP+  +G+PEEVA    +L ++  A Y+TG  L +DGGM +
Sbjct:  105 MSLEDWQRVIDVNVTGTFLGAKAALNHMMKNNIKGNVLNISSVHQQIPRPVNVQYSTSKGGIKMMTETLALNYADKGIRVNAIAPGTIATESNVDTKKEESRQKQLKKIPMKAFGKPEEVAAAAAWL-VSEEASYVTGATLFVDGGMTL 252          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: Y4VI_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4vI OS=Rhizobium sp. (strain NGR234) GN=NGR_a01150 PE=3 SV=2)

HSP 1 Score: 97.0561 bits (240), Expect = 1.012e-19
Identity = 56/140 (40.00%), Postives = 86/140 (61.43%), Query Frame = -3
Query:  309 WQDVIDLNLTGVF--LCTQGR-------IINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL---GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 692
            +Q  + +NL G +   C   +       I+N+AS+ GL+GN  ++ Y+A+KAG+I +TK++A  +ASR I V A+APG + + M A+L   G+     I  ++PLGR  +P+E+A  V FLA +  A YITG  L +DGG
Sbjct:  108 FQRALAINLVGAYSVACETAKLMKPGAAIVNVASLAGLLGNPKRSAYAASKAGLISITKSLACRWASRGIRVTAVAPGHVRTPMVAELERAGKLDVSAIRRRVPLGRIARPDEIARAVRFLA-SAQASYITGSTLVVDGG 246          

HSP 2 Score: 70.8626 bits (172), Expect = 7.767e-12
Identity = 49/141 (34.75%), Postives = 73/141 (51.77%), Query Frame = -3
Query:  303 VIDLNLTGVFLCTQGRIINIASVVGLVGNIGQA----------NYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFI----ASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 683
            ++D+NLTG F C +   I++ S   ++ N+G +           Y A  AG+  LT+  A E     I    +APG+I    A+ + A  G D    + ++IPLGR G  EEVA    FLA +  A YI G +L +DGG++
Sbjct:  377 ILDVNLTGAFTCVREAAISMRSG-SVILNLGASLSLSPLAPSHAYGAYNAGIDMLTRCTAAELGPLGIRTATVAPGYIRTCAANRLAAVAGMD-SASLRQRIPLGRVGDAEEVAEAAYFLA-SFDASYINGSILHVDGGLI 514          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: PECR_RAT (Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus norvegicus GN=Pecr PE=2 SV=1)

HSP 1 Score: 92.8189 bits (229), Expect = 1.909e-18
Identity = 59/146 (40.41%), Postives = 83/146 (56.85%), Query Frame = -3
Query:  300 WQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFI----ASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 692
            WQ VI+ NLTG F   +           G I+NI  ++   G    A+  AA+AGV  LTKT+A  +AS  + +N +APG I    A D   +LG+ + +   E IP  R G PEE++ LV FL L+PAA +ITGQ++ +DGG  +
Sbjct:  124 WQAVIETNLTGTFYMCKAVYNSWMKDHGGSIVNIIVLLNN-GFPTAAHSGAARAGVYNLTKTMALTWASSGVRINCVAPGTIYSQTAVDNYGELGQTMFEMAFENIPAKRVGLPEEISPLVCFL-LSPAASFITGQLINVDGGQAL 267          
The following BLAST results are available for this feature:
BLAST of CX291650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
CBR4_HUMAN2.574e-2350.89Carbonyl reductase family member 4 OS=Homo sapiens... [more]
KDUD_BACSU1.668e-2240.282-dehydro-3-deoxy-D-gluconate 5-dehydrogenase OS=B... [more]
FABG_AGGAC4.854e-2244.373-oxoacyl-[acyl-carrier-protein] reductase OS=Aggr... [more]
DHKR_STRCM6.339e-2241.83Monensin polyketide synthase putative ketoacyl red... [more]
ACT3_STRCO2.409e-2139.22Putative ketoacyl reductase OS=Streptomyces coelic... [more]
HCDS_XANP27.008e-2139.732-(S)-hydroxypropyl-CoM dehydrogenase OS=Xanthobac... [more]
DHK1_STRVN2.039e-2039.87Granaticin polyketide synthase putative ketoacyl r... [more]
DHG2_BACSU7.749e-2038.26Glucose 1-dehydrogenase 2 OS=Bacillus subtilis GN=... [more]
Y4VI_RHISN1.012e-1940.00Uncharacterized short-chain type dehydrogenase/red... [more]
PECR_RAT1.909e-1840.41Peroxisomal trans-2-enoyl-CoA reductase OS=Rattus ... [more]

Pages

back to top
Properties
Property NameValue
Genbank descriptionC03011F11SK OF2 Citrus clementina cDNA clone C03011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291650 ID=CX291650; Name=CX291650; organism=Citrus clementina; type=EST; length=709bp
TTTTTTTTTTTGAAAGCAATTTGAAGACAACATATAGCAGAGTATGTATC
ACCCAAAAACTACATTCCATAATGCCAATTTGAAGTACAACAAATGTTAC
GCGCCTCATGTTTGGTTTTTGCAACATGCTTAGCTTAAATTCTACCAAAA
CTTACCTGAATTTTTATTTCATAACAACACTTTGGCAACATTTCCTCATA
GGATCATAAAGCAGACAAAGTTTCAACCCAGTCGATCTTACATATGAGAG
CTACAGGTCAGAACTGAAACTAAACCAGGCAGAATGGGTCACTGACCTAC
ATAACCATTCCTCCGTCAATAGTAAGCACCTGTCCAGTAATGTAACCGGC
AGCGGGATTGAGGGCCAAGAATTCCACCAGTCCAGCAACTTCTTCAGGTT
GGCCATACCTTCCTAAGGGGATTTTCTCCAAGATCTTCTTTTCTAGGTCT
TCGCCAAGCTTGGCGGTCATATCAGACGCGATGAATCCTGGTGCAATAGC
ATTGACATTAATGTTTCTGCTTGCATATTCCTTTGCAACAGTTTTTGTCA
GGCCAATAACACCTGCTTTTGCAGCACTGTAATTGGCTTGGCCAATATTT
CCAACCAGACCAACAACTGATGCTATATTGATTATTCTTCCCTGTGTACA
CAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCATTGTGACT
TCTTCATTC
back to top