CX291650

Overview
NameCX291650
Unique NameCX291650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: YGCW_ECOLI (Uncharacterized oxidoreductase ygcW OS=Escherichia coli (strain K12) GN=ygcW PE=3 SV=2)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 50/147 (34.01%), Postives = 79/147 (53.74%), Query Frame = -3
Query:  300 KSQWQDVIDLNLTGVFLCT-----------QGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMT--AKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 701
            ++ W  +ID+NLT  F  +            G+IINI S+   +G      YSA K  + G TK    E    NI VN IAPG+ A+D+T   +   +  +++L+ IP  R+G  +++ G   FLA +PA+ Y+ G +L +DGG ++
Sbjct:  115 RADWDPMIDVNLTAAFELSYEAAKIMIPQKSGKIINICSLFSYLGGQWSPAYSATKHALAGFTKAYCDELGQYNIQVNGIAPGYYATDITLATRSNPETNQRVLDHIPANRWGDTQDLMGAAVFLA-SPASNYVNGHLLVVDGGYLV 260          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: BACC2_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=1)

HSP 1 Score: 92.4337 bits (228), Expect = 2.493e-18
Identity = 56/152 (36.84%), Postives = 87/152 (57.24%), Query Frame = -3
Query:  309 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAK--------LGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 707
            M+ S W  V+++NLTG+FL ++           G IIN  SV G+V       Y+A+K GV+ LT+++A +YA  NI VN + PG I + +  K          E+++K+  +  PL R G+PEE+A ++ FLA +  + Y+TG  +T DGG
Sbjct:   99 MELSNWNKVLNVNLTGMFLMSKHALKYMLKSGKGNIINTCSVGGVVAWPDIPAYNASKGGVLQLTRSMAVDYAKHNIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLA-SDLSSYMTGSAITADGG 249          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: Y4MP_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4mP OS=Rhizobium sp. (strain NGR234) GN=NGR_a02430 PE=3 SV=1)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 55/147 (37.41%), Postives = 86/147 (58.50%), Query Frame = -3
Query:  300 SQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGN--IGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTA-KLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 698
            + WQ ++ +N+TGV   +Q           G I  ++SV    G    G  +YSAAKAGV+GL K +A+E+   +I VN + PG I +D+T  KL  ++   I++ IPL R G   +VA +  FLA + +A Y+TG V+ ++GGM++
Sbjct:  107 ADWQRIVAVNMTGVLNLSQVFIPNMRQNGGGSIACMSSVSAQRGGGIFGGPHYSAAKAGVLGLAKAMAREFGPDSIRVNCVTPGLIQTDITGDKLSAEMRADIVKGIPLSRLGDARDVANIYLFLASDLSA-YVTGAVIDVNGGMLI 252          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: BACC_BACSU (Bacilysin biosynthesis oxidoreductase bacC OS=Bacillus subtilis GN=bacC PE=3 SV=2)

HSP 1 Score: 92.0485 bits (227), Expect = 3.256e-18
Identity = 57/152 (37.50%), Postives = 85/152 (55.92%), Query Frame = -3
Query:  309 MKKSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAK--------LGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 707
            M+ S W  V+ +NLTG+FL ++           G IIN  SV GLV       Y+A+K GV+ LTK++A +YA   I VN + PG I + +  K          E+++K+  +  PL R G+PEE+A ++ FLA +  + Y+TG  +T DGG
Sbjct:   99 MELSDWNKVLQVNLTGMFLMSKHALKHMLAAGKGNIINTCSVGGLVAWPDIPAYNASKGGVLQLTKSMAVDYAKHQIRVNCVCPGIIDTPLNEKSFLENNEGTLEEIKKEKAKVNPLLRLGKPEEIANVMLFLA-SDLSSYMTGSAITADGG 249          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: HSD_MYCTU (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium tuberculosis GN=fabG3 PE=1 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = -3
Query:  303 SQWQDVIDLNLTGVFL-----------CTQGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 698
            ++WQ ++D+NLTGVFL             +G IINI+S+ GL G +    Y+A K  V GLTK+ A E     I VN+I PG + + MT  + ED     + +  LGR  +P EV+ LV +LA +  + Y TG    +DGG V
Sbjct:  103 TEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED-----IFQTALGRAAEPVEVSNLVVYLA-SDESSYSTGAEFVVDGGTV 239          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: HSD_MYCBO (3-alpha-(or 20-beta)-hydroxysteroid dehydrogenase OS=Mycobacterium bovis GN=fabG3 PE=3 SV=1)

HSP 1 Score: 91.6633 bits (226), Expect = 4.252e-18
Identity = 56/143 (39.16%), Postives = 79/143 (55.24%), Query Frame = -3
Query:  303 SQWQDVIDLNLTGVFL-----------CTQGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 698
            ++WQ ++D+NLTGVFL             +G IINI+S+ GL G +    Y+A K  V GLTK+ A E     I VN+I PG + + MT  + ED     + +  LGR  +P EV+ LV +LA +  + Y TG    +DGG V
Sbjct:  103 TEWQRILDVNLTGVFLGIRAVVKPMKEAGRGSIINISSIEGLAGTVACHGYTATKFAVRGLTKSTALELGPSGIRVNSIHPGLVKTPMTDWVPED-----IFQTALGRAAEPVEVSNLVVYLA-SDESSYSTGAEFVVDGGTV 239          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: YXBG_BACSU (Uncharacterized oxidoreductase yxbG OS=Bacillus subtilis GN=yxbG PE=3 SV=2)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 53/145 (36.55%), Postives = 87/145 (60.00%), Query Frame = -3
Query:  303 VIDLNLTGVFLCTQ----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKI--------PLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 683
            +I ++L G FLC++          G IIN +S+ G   ++ ++ Y+AAK G+  LTK +A +YA   I VN+I+PG I + +  KL    E+++ E+         PLGR GQP+E+A +  FLA + ++ Y+TG+ +T DGG++
Sbjct:  111 IIAVDLRGTFLCSKYLIPLMLENGGSIINTSSMSGRAADLDRSGYNAAKGGITNLTKAMAIDYARNGIRVNSISPGTIETPLIDKLAGTKEQEMGEQFREANKWITPLGRLGQPKEMATVALFLASDDSS-YVTGEDITADGGIM 254          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: BAIA1_EUBSP (Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (strain VPI 12708) GN=baiA1 PE=1 SV=3)

HSP 1 Score: 91.2781 bits (225), Expect = 5.553e-18
Identity = 51/143 (35.66%), Postives = 84/143 (58.74%), Query Frame = -3
Query:  312 MKKSQWQDVIDLNLTGVFL-----------CTQGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDG 707
            + +  +++++D+N+ GVF              QG IIN ASV G+ G++    Y  +KAGVIGLT  + +E   +NI V  +APG + +DMT  L  ++ +  L+ +P+ R  +PEE+A +  FLA + A+G IT   +++DG
Sbjct:  104 VSEEDFKNIMDINVNGVFNGAWSAYQCMKDAKQGVIINTASVTGIYGSLSGIGYPTSKAGVIGLTHGLGREIIRKNIRVVGVAPGVVDTDMTKGLPPEILEDYLKTLPMKRMLKPEEIANVYLFLASDLASG-ITATTISVDG 245          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: TRNH1_ARATH (Tropinone reductase homolog At1g07440 OS=Arabidopsis thaliana GN=At1g07440 PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 48/115 (41.74%), Postives = 74/115 (64.35%), Query Frame = -3
Query:  300 GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMT-AKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 641
            G II ++S+ G+V     + YSA K  +  L + +A E+AS  I  NA+AP  IA+ +  A   ++ +K ++ + PLGR+G+PEEV+ LV FL + PAA YITGQ + +DGG+ +
Sbjct:  144 GNIIFMSSIAGVVSASVGSIYSATKGALNQLARNLACEWASDGIRANAVAPAVIATPLAEAVYDDEFKKVVISRKPLGRFGEPEEVSSLVAFLCM-PAASYITGQTICVDGGLTV 257          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: GNO_GLUOX (Gluconate 5-dehydrogenase OS=Gluconobacter oxydans GN=gno PE=1 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 9.472e-18
Identity = 49/147 (33.33%), Postives = 81/147 (55.10%), Query Frame = -3
Query:  300 KSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKL--GEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 701
            +  W D++  N+  VF   Q           G+I+NI SV   +   G A Y+A K  V  LTK +A ++    + +N +APG+ A++MT +L   E+    + ++ P GR+GQ EE+ G   FL+ + A+ ++ GQVL +DGG+ +
Sbjct:  109 RKDWDDLMSTNVNAVFFVGQAVARHMIPRGRGKIVNICSVQSELARPGIAPYTATKGAVKNLTKGMATDWGRHGLQINGLAPGYFATEMTERLVADEEFTDWLCKRTPAGRWGQVEELVGAAVFLS-SRASSFVNGQVLMVDGGITV 254          
The following BLAST results are available for this feature:
BLAST of CX291650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
YGCW_ECOLI2.493e-1834.01Uncharacterized oxidoreductase ygcW OS=Escherichia... [more]
BACC2_BACSU2.493e-1836.84Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
Y4MP_RHISN3.256e-1837.41Uncharacterized short-chain type dehydrogenase/red... [more]
BACC_BACSU3.256e-1837.50Bacilysin biosynthesis oxidoreductase bacC OS=Baci... [more]
HSD_MYCTU4.252e-1839.163-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
HSD_MYCBO4.252e-1839.163-alpha-(or 20-beta)-hydroxysteroid dehydrogenase ... [more]
YXBG_BACSU5.553e-1836.55Uncharacterized oxidoreductase yxbG OS=Bacillus su... [more]
BAIA1_EUBSP5.553e-1835.66Bile acid 7-dehydroxylase 1/3 OS=Eubacterium sp. (... [more]
TRNH1_ARATH9.472e-1841.74Tropinone reductase homolog At1g07440 OS=Arabidops... [more]
GNO_GLUOX9.472e-1833.33Gluconate 5-dehydrogenase OS=Gluconobacter oxydans... [more]

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Properties
Property NameValue
Genbank descriptionC03011F11SK OF2 Citrus clementina cDNA clone C03011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291650 ID=CX291650; Name=CX291650; organism=Citrus clementina; type=EST; length=709bp
TTTTTTTTTTTGAAAGCAATTTGAAGACAACATATAGCAGAGTATGTATC
ACCCAAAAACTACATTCCATAATGCCAATTTGAAGTACAACAAATGTTAC
GCGCCTCATGTTTGGTTTTTGCAACATGCTTAGCTTAAATTCTACCAAAA
CTTACCTGAATTTTTATTTCATAACAACACTTTGGCAACATTTCCTCATA
GGATCATAAAGCAGACAAAGTTTCAACCCAGTCGATCTTACATATGAGAG
CTACAGGTCAGAACTGAAACTAAACCAGGCAGAATGGGTCACTGACCTAC
ATAACCATTCCTCCGTCAATAGTAAGCACCTGTCCAGTAATGTAACCGGC
AGCGGGATTGAGGGCCAAGAATTCCACCAGTCCAGCAACTTCTTCAGGTT
GGCCATACCTTCCTAAGGGGATTTTCTCCAAGATCTTCTTTTCTAGGTCT
TCGCCAAGCTTGGCGGTCATATCAGACGCGATGAATCCTGGTGCAATAGC
ATTGACATTAATGTTTCTGCTTGCATATTCCTTTGCAACAGTTTTTGTCA
GGCCAATAACACCTGCTTTTGCAGCACTGTAATTGGCTTGGCCAATATTT
CCAACCAGACCAACAACTGATGCTATATTGATTATTCTTCCCTGTGTACA
CAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCATTGTGACT
TCTTCATTC
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