CX291650

Overview
NameCX291650
Unique NameCX291650
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length709
Libraries
Library NameType
OF2cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: Y4LA_RHISN (Uncharacterized short-chain type dehydrogenase/reductase y4lA OS=Rhizobium sp. (strain NGR234) GN=NGR_a02730 PE=3 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 53/142 (37.32%), Postives = 81/142 (57.04%), Query Frame = -3
Query:  303 WQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASD-MTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMV 692
            W   +  NL G  LC +           G I+N++S  GL G+  Q +Y+ +KA +  L+ ++A +Y    I  NA+APG I ++ + AKL + +++ +     L R G PE+VA LV FL L+  A +ITGQV+ IDGGM+
Sbjct:  111 WDQTMATNLRGTLLCCRQAIPRMIARGGGAIVNMSSCQGLSGDTAQTSYAVSKAAMNMLSASLATQYGHAQIRCNAVAPGLIMTERLLAKLDKCMQRHLSRHQLLPRVGHPEDVAALVAFL-LSDDASFITGQVVCIDGGML 251          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: RHLG_PSEAE (Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-protein] reductase OS=Pseudomonas aeruginosa GN=rhlG PE=1 SV=1)

HSP 1 Score: 89.7373 bits (221), Expect = 1.616e-17
Identity = 59/148 (39.86%), Postives = 79/148 (53.38%), Query Frame = -3
Query:  309 SQWQDVIDLNLTGVFLCTQ---------------GRIINIASVVGLVGNIGQAN-YSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILE--KIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 698
            S W+ V+ LN+T VF C Q                R+INI SV G+     QA  Y  +KA +  L++ +AKE    +INVN IAPG   S MT  +  D +    +   IP+GR+G+PEE+A L   LA   A  Y+TG V+ IDGG
Sbjct:  107 SGWEKVMQLNVTSVFSCIQQLLPLLRRSASAENPARVINIGSVAGISAMGEQAYAYGPSKAALHQLSRMLAKELVGEHINVNVIAPGRFPSRMTRHIANDPQALEADSASIPMGRWGRPEEMAALAISLA-GTAGAYMTGNVIPIDGG 253          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHRS4_RABIT (Dehydrogenase/reductase SDR family member 4 OS=Oryctolagus cuniculus GN=DHRS4 PE=1 SV=1)

HSP 1 Score: 89.3521 bits (220), Expect = 2.110e-17
Identity = 49/141 (34.75%), Postives = 80/141 (56.74%), Query Frame = -3
Query:  309 WQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 692
            W  ++D+N+  + L T+           G ++ +AS+       G   Y+ +K  ++GLTK +A E A++NI VN +APG I +  +  L ED   E+ I++K+ + R G+PEE AG+V FL  +  A YITG+ + + GG
Sbjct:  116 WDKILDINVKAMALMTKAVVPEMEKRGGGSVVIVASIAAFNPFSGLGPYNVSKTALVGLTKNLALELAAQNIRVNCLAPGLIKTSFSKALWEDKAQEENIIQKLRIRRLGKPEECAGIVSFLC-SEDASYITGETVVVAGG 255          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: PECR_MOUSE (Peroxisomal trans-2-enoyl-CoA reductase OS=Mus musculus GN=Pecr PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 57/146 (39.04%), Postives = 83/146 (56.85%), Query Frame = -3
Query:  300 WQDVIDLNLTGVF-LCTQ----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFI----ASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 692
            W  VI+ NLTG F +C +          G I+NI  ++   G    A+  AA+ GV  LTK++A  +AS  + +N +APG I    A D   ++G+ L +   + IP  R G PEE++ LV FL L+PAA YITGQ++ +DGG  +
Sbjct:  124 WHAVIETNLTGTFYMCKEVYNSWMREHGGSIVNIIVLLNN-GFPTAAHTGAAREGVYNLTKSMALAWASSGVRINCVAPGTIYSQTAVDNYGEMGQTLFEMAFDSIPAKRLGVPEEISPLVCFL-LSPAASYITGQLINVDGGQAL 267          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: IDNO_ECOLI (Gluconate 5-dehydrogenase OS=Escherichia coli (strain K12) GN=idnO PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = -3
Query:  300 KSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 701
            + +W DVI +N T VFL +Q           G++INI S+   +G      Y+A+K  V  LT+ +  E A  NI VN IAPG+  ++MT  L ED      + ++ P  R+G P+E+ G   FL+ + A+ ++ G +L +DGGM++
Sbjct:  107 EQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLS-SKASDFVNGHLLFVDGGMLV 252          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: IDNO_ECOL6 (Gluconate 5-dehydrogenase OS=Escherichia coli O6 GN=idnO PE=3 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 52/147 (35.37%), Postives = 82/147 (55.78%), Query Frame = -3
Query:  300 KSQWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGED--LEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGMVM 701
            + +W DVI +N T VFL +Q           G++INI S+   +G      Y+A+K  V  LT+ +  E A  NI VN IAPG+  ++MT  L ED      + ++ P  R+G P+E+ G   FL+ + A+ ++ G +L +DGGM++
Sbjct:  107 EQEWNDVIAVNQTAVFLVSQAVTRHMVERKAGKVINICSMQSELGRDTITPYAASKGAVKMLTRGMCVELARHNIQVNGIAPGYFKTEMTKALVEDEAFTAWLCKRTPAARWGDPQELIGAAVFLS-SKASDFVNGHLLFVDGGMLV 252          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: FADH_BACSU (Probable 2,4-dienoyl-CoA reductase OS=Bacillus subtilis GN=fadH PE=2 SV=1)

HSP 1 Score: 88.9669 bits (219), Expect = 2.756e-17
Identity = 57/144 (39.58%), Postives = 80/144 (55.56%), Query Frame = -3
Query:  309 WQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASR-NINVNAIAPGFIASDMTAKLGEDLEK---KILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 692
            W+ VI++ L G F C+Q            G I+N+A+        G  + +AAKAGV+ LT+T+A E+ S+  I  NAIAPG I     A+   + EK   + +  +PLGR G PEE+A L  FL L+  A YI G  +T+DGG
Sbjct:  104 WKAVIEIVLNGTFFCSQAAARHWIDQKQQGVILNMAATYAWGAGAGVVHSAAAKAGVLSLTRTLAVEWGSKYGIRTNAIAPGPIERTGGAEKLFESEKAMARTMNSVPLGRLGTPEEIAALAAFL-LSDEASYINGDCITMDGG 246          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: SOU1_CANAL (Sorbose reductase SOU1 OS=Candida albicans GN=SOU1 PE=1 SV=1)

HSP 1 Score: 88.5817 bits (218), Expect = 3.599e-17
Identity = 52/142 (36.62%), Postives = 81/142 (57.04%), Query Frame = -3
Query:  309 QWQDVIDLNLTGVFLCTQ-----------GRIINIASVVGLVGNIGQ--ANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGG 695
            QW+ ++D +L GV+ C             G +I  +S+ G + NI Q  A Y+AAKA    L K+++ E+AS    VN+I+PG+I +D+      +++KK  +  PLGR G P+E+ G   +LA N A+ Y TG  + +DGG
Sbjct:  137 QWKKIVDCDLNGVYYCAHTVGQIFKKNKSGSLIITSSMSGTIVNIPQLQAPYNAAKAACTHLAKSLSVEWASFGARVNSISPGYILTDIADFADPEMKKKWWQLTPLGREGLPQELVGAYLYLASN-ASTYTTGSNIAVDGG 277          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: BAIA2_EUBSP (Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (strain VPI 12708) GN=baiA2 PE=2 SV=1)

HSP 1 Score: 88.1965 bits (217), Expect = 4.701e-17
Identity = 50/143 (34.97%), Postives = 84/143 (58.74%), Query Frame = -3
Query:  312 MKKSQWQDVIDLNLTGVFL-----------CTQGRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKKILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDG 707
            + + +++ ++D+N+TGVF              +G IIN ASV G+ G++    Y A+KA VIGLT  + +E   +NI V  +APG + +DMT     ++ +  L+ +P+ R  +PEE+A +  FLA + A+G IT   +++DG
Sbjct:  104 VSEEEFKHIMDINVTGVFNGAWCAYQCMKDAKKGVIINTASVTGIFGSLSGVGYPASKASVIGLTHGLGREIIRKNIRVVGVAPGVVNTDMTNGNPPEIMEGYLKALPMKRMLEPEEIANVYLFLASDLASG-ITATTVSVDG 245          
BLAST of CX291650 vs. ExPASy Swiss-Prot
Match: DHG2_BACME (Glucose 1-dehydrogenase 2 OS=Bacillus megaterium GN=gdhII PE=3 SV=1)

HSP 1 Score: 87.8113 bits (216), Expect = 6.140e-17
Identity = 55/143 (38.46%), Postives = 82/143 (57.34%), Query Frame = -3
Query:  306 WQDVIDLNLTGVFLCTQ------------GRIINIASVVGLVGNIGQANYSAAKAGVIGLTKTVAKEYASRNINVNAIAPGFIASDMTAKLGEDLEKK--ILEKIPLGRYGQPEEVAGLVEFLALNPAAGYITGQVLTIDGGM 692
            W  VID NLTG FL ++            G +IN++SV  ++      +Y+A+K G+  +T+T+A EYA + I VN I PG I + + A+   D E++  +   IP+G  G+PEE+A +  FLA +  A Y+TG  L  DGGM
Sbjct:  109 WNQVIDTNLTGAFLGSREAIKYFVENDIKGNVINMSSVHEMIPWPLFVHYAASKGGMKLMTETLALEYAPKGIRVNNIGPGAIDTPINAEKFADPEQRADVESMIPMGYIGKPEEIASVAAFLA-SSQASYVTGITLFADGGM 250          
The following BLAST results are available for this feature:
BLAST of CX291650 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 203
Match NameE-valueIdentityDescription
Y4LA_RHISN1.616e-1737.32Uncharacterized short-chain type dehydrogenase/red... [more]
RHLG_PSEAE1.616e-1739.86Rhamnolipids biosynthesis 3-oxoacyl-[acyl-carrier-... [more]
DHRS4_RABIT2.110e-1734.75Dehydrogenase/reductase SDR family member 4 OS=Ory... [more]
PECR_MOUSE2.756e-1739.04Peroxisomal trans-2-enoyl-CoA reductase OS=Mus mus... [more]
IDNO_ECOLI2.756e-1735.37Gluconate 5-dehydrogenase OS=Escherichia coli (str... [more]
IDNO_ECOL62.756e-1735.37Gluconate 5-dehydrogenase OS=Escherichia coli O6 G... [more]
FADH_BACSU2.756e-1739.58Probable 2,4-dienoyl-CoA reductase OS=Bacillus sub... [more]
SOU1_CANAL3.599e-1736.62Sorbose reductase SOU1 OS=Candida albicans GN=SOU1... [more]
BAIA2_EUBSP4.701e-1734.97Bile acid 7-dehydroxylase 2 OS=Eubacterium sp. (st... [more]
DHG2_BACME6.140e-1738.46Glucose 1-dehydrogenase 2 OS=Bacillus megaterium G... [more]

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Properties
Property NameValue
Genbank descriptionC03011F11SK OF2 Citrus clementina cDNA clone C03011F11, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291650 ID=CX291650; Name=CX291650; organism=Citrus clementina; type=EST; length=709bp
TTTTTTTTTTTGAAAGCAATTTGAAGACAACATATAGCAGAGTATGTATC
ACCCAAAAACTACATTCCATAATGCCAATTTGAAGTACAACAAATGTTAC
GCGCCTCATGTTTGGTTTTTGCAACATGCTTAGCTTAAATTCTACCAAAA
CTTACCTGAATTTTTATTTCATAACAACACTTTGGCAACATTTCCTCATA
GGATCATAAAGCAGACAAAGTTTCAACCCAGTCGATCTTACATATGAGAG
CTACAGGTCAGAACTGAAACTAAACCAGGCAGAATGGGTCACTGACCTAC
ATAACCATTCCTCCGTCAATAGTAAGCACCTGTCCAGTAATGTAACCGGC
AGCGGGATTGAGGGCCAAGAATTCCACCAGTCCAGCAACTTCTTCAGGTT
GGCCATACCTTCCTAAGGGGATTTTCTCCAAGATCTTCTTTTCTAGGTCT
TCGCCAAGCTTGGCGGTCATATCAGACGCGATGAATCCTGGTGCAATAGC
ATTGACATTAATGTTTCTGCTTGCATATTCCTTTGCAACAGTTTTTGTCA
GGCCAATAACACCTGCTTTTGCAGCACTGTAATTGGCTTGGCCAATATTT
CCAACCAGACCAACAACTGATGCTATATTGATTATTCTTCCCTGTGTACA
CAGGAATACACCTGTAAGATTCAGATCGATAACGTCCTGCCATTGTGACT
TCTTCATTC
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