CX291686

Overview
NameCX291686
Unique NameCX291686
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length500
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULIA (Translation initiation factor 1A OS=Sulfolobus islandicus (strain M.16.27) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  250 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 489
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPKPEEGQTICVVKKMLGGDHLVVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_HALS3 (Translation initiation factor 1A OS=Halobacterium salinarum (strain ATCC 29341 / DSM 671 / R1) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = -3
Query:  232 KRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 492
            ++ L   ED + +A+V  MLG  R +  C DG +R   I G+M K++WI   DI+LV   D+QDDKADV  +Y   +A  L+  G +
Sbjct:    8 RKNLRMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEPWDWQDDKADVTWRYEKSDADQLREEGHI 94          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A1_HALSA (Translation initiation factor 1A 1 OS=Halobacterium salinarium GN=eIF1A1 PE=3 SV=1)

HSP 1 Score: 72.0182 bits (175), Expect = 1.692e-12
Identity = 35/87 (40.23%), Postives = 51/87 (58.62%), Query Frame = -3
Query:  232 KRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGEL 492
            ++ L   ED + +A+V  MLG  R +  C DG +R   I G+M K++WI   DI+LV   D+QDDKADV  +Y   +A  L+  G +
Sbjct:    8 RKNLRMPEDDEVFAEVTDMLGANRVQVRCADGEERTARIPGRMQKRIWIREDDIVLVEPWDWQDDKADVTWRYEKSDADQLREEGHI 94          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULSO (Translation initiation factor 1A OS=Sulfolobus solfataricus GN=eIF1A PE=3 SV=1)

HSP 1 Score: 71.633 bits (174), Expect = 2.210e-12
Identity = 32/80 (40.00%), Postives = 51/80 (63.75%), Query Frame = -3
Query:  250 RELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 489
            R++   E+GQ    V +MLG      +C+DG +RL  I GK+ KK+W+  GD++LVG+ D+Q ++ D++ KY  DE + L
Sbjct:   13 RDVPRPEEGQTICVVKKMLGGDHLIVLCMDGKERLARIPGKIRKKMWMREGDVVLVGIWDFQPNRCDILYKYGNDEIKRL 92          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_NATPD (Translation initiation factor 1A OS=Natronomonas pharaonis (strain DSM 2160 / ATCC 35678) GN=eif1a PE=3 SV=1)

HSP 1 Score: 70.8626 bits (172), Expect = 3.770e-12
Identity = 33/90 (36.67%), Postives = 53/90 (58.89%), Query Frame = -3
Query:  223 KRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPET 492
            ++ L   E  + +A V  MLG  R +  C+DG +R   I G+M K++WI   D++LV   D+QD+KADV+ +Y   EA  L+  G + ++
Sbjct:    7 RKNLRMPEGDEVFAVVTNMLGANRVKVRCMDGTERTARIPGRMQKRIWIREDDVVLVEPWDWQDEKADVVWRYEKQEADQLREEGHITDS 96          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_PICTO (Translation initiation factor 1A OS=Picrophilus torridus GN=eif1a PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 8.398e-12
Identity = 34/83 (40.96%), Postives = 48/83 (57.83%), Query Frame = -3
Query:  226 KEDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 474
            K+ G+ Y  V +M G  R   MC DG  R C I GKM K++WI  GD+++V   ++QD+K D+I +Y   +A  L     LPE
Sbjct:   17 KKSGEIYGIVEKMSGASRLIVMCEDGVTRNCRIPGKMKKRMWIREGDLVIVKPWEFQDEKGDIIYRYTKTQAAYLSRNHMLPE 99          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_METLZ (Translation initiation factor 1A OS=Methanocorpusculum labreanum (strain ATCC 43576 / DSM 4855 / Z) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 67.3958 bits (163), Expect = 4.168e-11
Identity = 31/74 (41.89%), Postives = 46/74 (62.16%), Query Frame = -3
Query:  241 QEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAY 462
            +++AQ   MLG+      C DG  RL  I+GK+ K+VWI  GDI++V   D+QDDK D+I +Y   +   L+A+
Sbjct:   29 EQFAQAELMLGSNHIRVRCSDGVTRLGRIKGKIKKRVWIREGDILIVVPWDFQDDKCDIIYRYTTPQVDWLRAH 102          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_DESK1 (Translation initiation factor 1A OS=Desulfurococcus kamchatkensis (strain 1221n / DSM 18924) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 67.0106 bits (162), Expect = 5.443e-11
Identity = 34/82 (41.46%), Postives = 47/82 (57.32%), Query Frame = -3
Query:  226 EDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPE 471
            ++G     V+R LG     A C+DG  R   I GK+ +KVWI  GDIILVGL D+  +K +V+ KY  +E   L   G +P+
Sbjct:   25 DEGTIICGVVRHLGGDYLIAKCLDGVDRKIRIPGKLRRKVWITEGDIILVGLWDFSSEKGEVVYKYGKNEVNKLVEKGVVPK 106          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_SULTO (Translation initiation factor 1A OS=Sulfolobus tokodaii GN=eIF1A PE=3 SV=2)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 30/74 (40.54%), Postives = 45/74 (60.81%), Query Frame = -3
Query:  247 DGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLLK 468
            +G+    V +MLG    + +C+DG +RL  I GKM KK+W+  GD++L    D+Q +K D+I KY   E R L+
Sbjct:   20 EGEVICVVKKMLGAEHVQVICLDGKERLGRIPGKMKKKMWVKEGDVVLAAPWDFQPNKCDIIYKYSESEVRRLE 93          
BLAST of CX291686 vs. ExPASy Swiss-Prot
Match: IF1A_METS5 (Translation initiation factor 1A OS=Metallosphaera sedula (strain ATCC 51363 / DSM 5348) GN=eIF1A PE=3 SV=1)

HSP 1 Score: 66.2402 bits (160), Expect = 9.285e-11
Identity = 31/74 (41.89%), Postives = 43/74 (58.11%), Query Frame = -3
Query:  250 EDGQEYAQVLRMLGNGRCEAMCIDGAKRLCHIRGKMHKKVWIGAGDIILVGLRDYQDDKADVILKYMPDEARLL 471
            E+G+    V +MLG       C+DG +R   I G+M KK WI  GD++L    D+Q  KAD++ +YM DE R L
Sbjct:   19 EEGEVICVVKKMLGAEHIIIACLDGKERTARIPGRMRKKTWIKEGDVVLAAPWDFQPTKADIVYRYMNDEIRKL 92          
The following BLAST results are available for this feature:
BLAST of CX291686 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 30
Match NameE-valueIdentityDescription
IF1A_SULIA1.692e-1240.00Translation initiation factor 1A OS=Sulfolobus isl... [more]
IF1A_HALS31.692e-1240.23Translation initiation factor 1A OS=Halobacterium ... [more]
IF1A1_HALSA1.692e-1240.23Translation initiation factor 1A 1 OS=Halobacteriu... [more]
IF1A_SULSO2.210e-1240.00Translation initiation factor 1A OS=Sulfolobus sol... [more]
IF1A_NATPD3.770e-1236.67Translation initiation factor 1A OS=Natronomonas p... [more]
IF1A_PICTO8.398e-1240.96Translation initiation factor 1A OS=Picrophilus to... [more]
IF1A_METLZ4.168e-1141.89Translation initiation factor 1A OS=Methanocorpusc... [more]
IF1A_DESK15.443e-1141.46Translation initiation factor 1A OS=Desulfurococcu... [more]
IF1A_SULTO9.285e-1140.54Translation initiation factor 1A OS=Sulfolobus tok... [more]
IF1A_METS59.285e-1141.89Translation initiation factor 1A OS=Metallosphaera... [more]

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Properties
Property NameValue
Genbank descriptionC04002C02SK FlavFr1 Citrus clementina cDNA clone C04002C02, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291686 ID=CX291686; Name=CX291686; organism=Citrus clementina; type=EST; length=500bp
TTTTTTTTTAAACAGTAACCCGCTGATATTACATAAAACTAAGCATATCG
ATTTCATCATAAAATTAACAACAAAGAAAGCATGCATGGCATGCAGCAGA
AAAATATAAAAAGAGAAAGATTAGATCCTATCAATATCCTCATCCTCAAA
CTCAATATAATTATCGGGACCAGCTTCATCGTCGTCAACAATACCGGCAG
CAATCCCTTCGTTCAACCTAGTAGTCTCAGGCAATTCACCGTAAGCCTTG
AGCAAGCGGGCCTCATCAGGCATGTATTTCAAAATAACATCGGCTTTATC
GTCTTGATAATCTCTCAAACCGACAAGAATAATATCACCCGCACCAATCC
AAACCTTTTTGTGCATCTTACCACGGATGTGGCAGAGACGCTTGGCGCCG
TCGATGCACATGGCCTCGCATCGACCGTTCCCCAGCATCCGAAGCACCTG
CGCGTATTCTTGACCGTCTTCCTTGAATATCAGCTCGCGTTTCTCGTCGT
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