CX291689

Overview
NameCX291689
Unique NameCX291689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10061 contig Ccv1_Contig10061:30..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: CENPA_PICFA (Histone H3-like centromeric protein CSE4 OS=Pichia farinosa GN=CSE4 PE=3 SV=1)

HSP 1 Score: 69.707 bits (169), Expect = 5.241e-12
Identity = 36/55 (65.45%), Postives = 46/55 (83.64%), Query Frame = 2
Query:  170 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDF---KTDLRIQSHAVLA 325
            RYRPGT ALREIR+YQ+S+ELLIRKLPF RLV+E+A+++      +R QS+AVLA
Sbjct:   61 RYRPGTKALREIRRYQRSSELLIRKLPFARLVKEVAENYIGADYGIRWQSNAVLA 115          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: HCP3L_CAEEL (Histone H3-like centromeric protein cpar-1 OS=Caenorhabditis elegans GN=cpar-1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-11
Identity = 36/60 (60.00%), Postives = 42/60 (70.00%), Query Frame = 2
Query:  155 VKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQ---DFKTDLRIQSHAVLA 325
            + K  RYRPG  AL EIRKYQ+S +LLI K PF RLVREI Q    F +DLRI+S A+ A
Sbjct:  158 ISKTRRYRPGQKALEEIRKYQESEDLLIPKAPFARLVREIMQTSTPFSSDLRIRSDAINA 217          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: CENPA_SCHPO (Histone H3-like centromeric protein cnp1 OS=Schizosaccharomyces pombe GN=cnp1 PE=1 SV=1)

HSP 1 Score: 65.855 bits (159), Expect = 7.568e-11
Identity = 36/56 (64.29%), Postives = 44/56 (78.57%), Query Frame = 2
Query:  170 RYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQD----FKTD--LRIQSHAV 319
            RYRPGT ALREIRKYQ+ST+LLI++LPF R+VREI+ +    F TD  LR QS A+
Sbjct:   21 RYRPGTTALREIRKYQRSTDLLIQRLPFSRIVREISSEFVANFSTDVGLRWQSTAL 76          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_LITVA (Histone H3 (Fragments) OS=Litopenaeus vannamei PE=1 SV=1)

HSP 1 Score: 65.4698 bits (158), Expect = 9.884e-11
Identity = 37/47 (78.72%), Postives = 37/47 (78.72%), Query Frame = 2
Query:  161 KPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR 301
            KPHRYRPGTVALR       STELLIRKLPFQ   REIAQDFKTDLR
Sbjct:    1 KPHRYRPGTVALR-------STELLIRKLPFQ---REIAQDFKTDLR 37          
The following BLAST results are available for this feature:
BLAST of CX291689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
CENPA_PICFA5.241e-1265.45Histone H3-like centromeric protein CSE4 OS=Pichia... [more]
HCP3L_CAEEL7.568e-1160.00Histone H3-like centromeric protein cpar-1 OS=Caen... [more]
CENPA_SCHPO7.568e-1164.29Histone H3-like centromeric protein cnp1 OS=Schizo... [more]
H3_LITVA9.884e-1178.72Histone H3 (Fragments) OS=Litopenaeus vannamei PE=... [more]

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Properties
Property NameValue
Genbank descriptionC04002C06SK FlavFr1 Citrus clementina cDNA clone C04002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291689 ID=CX291689; Name=CX291689; organism=Citrus clementina; type=EST; length=326bp
TGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAA
TGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCG
AGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGG
TGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTG
AAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCT
TTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAG
GATCCAAAGCCACGCGGTTCTTGCGC
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