CX291689

Overview
NameCX291689
Unique NameCX291689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10061 contig Ccv1_Contig10061:30..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H32_BOVIN (Histone H3.2 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H31_RAT (Histone H3.1 OS=Rattus norvegicus PE=1 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H31_MUSPA (Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H31_MOUSE (Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H31_HUMAN (Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H31_BOVIN (Histone H3.1 OS=Bos taurus PE=1 SV=2)

HSP 1 Score: 172.17 bits (435), Expect = 7.498e-43
Identity = 87/92 (94.57%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H332_CAEEL (Histone H3.3 type 2 OS=Caenorhabditis elegans GN=his-72 PE=1 SV=3)

HSP 1 Score: 171.014 bits (432), Expect = 1.670e-42
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAV 319
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS A+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAI 90
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H331_CAEEL (Histone H3.3 type 1 OS=Caenorhabditis elegans GN=his-71 PE=2 SV=2)

HSP 1 Score: 171.014 bits (432), Expect = 1.670e-42
Identity = 86/90 (95.56%), Postives = 88/90 (97.78%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAV 319
            MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS A+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSAAI 90
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_STRPU (Histone H3, embryonic OS=Strongylocentrotus purpuratus PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.182e-42
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMA 92
[Close]
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_STRDR (Histone H3, embryonic OS=Strongylocentrotus droebachiensis PE=2 SV=2)

HSP 1 Score: 170.629 bits (431), Expect = 2.182e-42
Identity = 86/92 (93.48%), Postives = 89/92 (96.74%), Query Frame = 2 
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKT+LR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTELRFQSSAVMA 92
The following BLAST results are available for this feature:
BLAST of CX291689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
H32_BOVIN7.498e-4394.57Histone H3.2 OS=Bos taurus PE=1 SV=2[more]
H31_RAT7.498e-4394.57Histone H3.1 OS=Rattus norvegicus PE=1 SV=3[more]
H31_MUSPA7.498e-4394.57Histone H3.1 OS=Mus pahari GN=H3110 PE=2 SV=3[more]
H31_MOUSE7.498e-4394.57Histone H3.1 OS=Mus musculus GN=Hist1h3a PE=1 SV=2[more]
H31_HUMAN7.498e-4394.57Histone H3.1 OS=Homo sapiens GN=HIST1H3A PE=1 SV=2[more]
H31_BOVIN7.498e-4394.57Histone H3.1 OS=Bos taurus PE=1 SV=2[more]
H332_CAEEL1.670e-4295.56Histone H3.3 type 2 OS=Caenorhabditis elegans GN=h... [more]
H331_CAEEL1.670e-4295.56Histone H3.3 type 1 OS=Caenorhabditis elegans GN=h... [more]
H3_STRPU2.182e-4293.48Histone H3, embryonic OS=Strongylocentrotus purpur... [more]
H3_STRDR2.182e-4293.48Histone H3, embryonic OS=Strongylocentrotus droeba... [more]

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Properties
Property NameValue
Genbank descriptionC04002C06SK FlavFr1 Citrus clementina cDNA clone C04002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291689 ID=CX291689; Name=CX291689; organism=Citrus clementina; type=EST; length=326bp
TGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAA
TGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCG
AGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGG
TGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTG
AAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCT
TTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAG
GATCCAAAGCCACGCGGTTCTTGCGC
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