CX291689

Overview
NameCX291689
Unique NameCX291689
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length326
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Alignments
Feature NameTypeLocationAnalysis
Ccv1_Contig10061 contig Ccv1_Contig10061:30..355. BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1
Homology
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H32_ENCAL (Histone H3.2 OS=Encephalartos altensteinii PE=1 SV=2)

HSP 1 Score: 169.474 bits (428), Expect = 4.860e-42
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AV A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAVAA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H31T_HUMAN (Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3)

HSP 1 Score: 169.474 bits (428), Expect = 4.860e-42
Identity = 85/92 (92.39%), Postives = 88/92 (95.65%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATK ARKSAP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL+REIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKVARKSAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLMREIAQDFKTDLRFQSSAVMA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3L1_ARATH (Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g13370 PE=2 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 8.290e-42
Identity = 86/92 (93.48%), Postives = 88/92 (95.65%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQ+ARKS GGKAP KQLATKAARKSAPTTGGVKKPHR+RPGTVALREIRKYQKSTELL RKLPFQRLVREIAQDFKTDLR QSHAVLA
Sbjct:    1 MARTKQSARKSHGGKAPTKQLATKAARKSAPTTGGVKKPHRFRPGTVALREIRKYQKSTELLNRKLPFQRLVREIAQDFKTDLRFQSHAVLA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H32_LILLO (Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV=3)

HSP 1 Score: 168.703 bits (426), Expect = 8.290e-42
Identity = 86/92 (93.48%), Postives = 87/92 (94.57%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP TGGVKKPHR+RPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFK DLR QS AV A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPATGGVKKPHRFRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKADLRFQSSAVAA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H33_PONAB (Histone H3.3 OS=Pongo abelii PE=2 SV=3)

HSP 1 Score: 167.933 bits (424), Expect = 1.414e-41
Identity = 84/90 (93.33%), Postives = 87/90 (96.67%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAV 319
            MARTKQTARKSTGGKAPRKQLATKAARKSAP+TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRL REIAQDFKTDLR QS A+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPSTGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLAREIAQDFKTDLRFQSAAI 90          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_CAEEL (Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1 SV=4)

HSP 1 Score: 167.548 bits (423), Expect = 1.847e-41
Identity = 84/92 (91.30%), Postives = 88/92 (95.65%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHRYRPGTVALREIR+YQKSTELLIR+ PFQRLVREIAQDFKTDLR QS AV+A
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRYRPGTVALREIRRYQKSTELLIRRAPFQRLVREIAQDFKTDLRFQSSAVMA 92          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_VOLCA (Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2)

HSP 1 Score: 167.162 bits (422), Expect = 2.412e-41
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLA 91          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H32_CHLRE (Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=ch3-II PE=1 SV=1)

HSP 1 Score: 167.162 bits (422), Expect = 2.412e-41
Identity = 87/92 (94.57%), Postives = 88/92 (95.65%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARK+ P TGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLR QS AVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKT-PATGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSQAVLA 91          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H31_SCHPO (Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=hht1 PE=1 SV=2)

HSP 1 Score: 166.777 bits (421), Expect = 3.150e-41
Identity = 83/90 (92.22%), Postives = 87/90 (96.67%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAV 319
            MARTKQTARKSTGGKAPRKQLA+KAARK+AP TGGVKKPHRYRPGTVALREIR+YQKSTELLIRKLPFQRLVREIAQDFKTDLR QS A+
Sbjct:    1 MARTKQTARKSTGGKAPRKQLASKAARKAAPATGGVKKPHRYRPGTVALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTDLRFQSSAI 90          
BLAST of CX291689 vs. ExPASy Swiss-Prot
Match: H3_GRIJA (Histone H3 OS=Griffithsia japonica PE=2 SV=3)

HSP 1 Score: 166.392 bits (420), Expect = 4.115e-41
Identity = 83/92 (90.22%), Postives = 89/92 (96.74%), Query Frame = 2
Query:   50 MARTKQTARKSTGGKAPRKQLATKAARKSAPTTGGVKKPHRYRPGTVALREIRKYQKSTELLIRKLPFQRLVREIAQDFKTDLRIQSHAVLA 325
            MARTKQTARKSTGGKAPRKQLATKAARKSAP +GGVKKPHR+RPGTVALREIR++QKSTELL+RKLPFQRLVREIAQDFK+DLR QS AVLA
Sbjct:    1 MARTKQTARKSTGGKAPRKQLATKAARKSAPASGGVKKPHRFRPGTVALREIRRFQKSTELLVRKLPFQRLVREIAQDFKSDLRFQSSAVLA 92          
The following BLAST results are available for this feature:
BLAST of CX291689 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 194
Match NameE-valueIdentityDescription
H32_ENCAL4.860e-4293.48Histone H3.2 OS=Encephalartos altensteinii PE=1 SV... [more]
H31T_HUMAN4.860e-4292.39Histone H3.1t OS=Homo sapiens GN=HIST3H3 PE=1 SV=3[more]
H3L1_ARATH8.290e-4293.48Histone H3-like 1 OS=Arabidopsis thaliana GN=At1g1... [more]
H32_LILLO8.290e-4293.48Histone H3.2 OS=Lilium longiflorum GN=YAH3 PE=1 SV... [more]
H33_PONAB1.414e-4193.33Histone H3.3 OS=Pongo abelii PE=2 SV=3[more]
H3_CAEEL1.847e-4191.30Histone H3 OS=Caenorhabditis elegans GN=his-2 PE=1... [more]
H3_VOLCA2.412e-4194.57Histone H3 OS=Volvox carteri GN=H3-I PE=3 SV=2[more]
H32_CHLRE2.412e-4194.57Histone H3 type 2 OS=Chlamydomonas reinhardtii GN=... [more]
H31_SCHPO3.150e-4192.22Histone H3.1/H3.2 OS=Schizosaccharomyces pombe GN=... [more]
H3_GRIJA4.115e-4190.22Histone H3 OS=Griffithsia japonica PE=2 SV=3[more]

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Properties
Property NameValue
Genbank descriptionC04002C06SK FlavFr1 Citrus clementina cDNA clone C04002C06, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291689 ID=CX291689; Name=CX291689; organism=Citrus clementina; type=EST; length=326bp
TGCATTCAGATCTGTGCATTTTGCAGTTTGTGTTGGTGATTAAAGAGTAA
TGGCCCGTACGAAGCAAACCGCGCGCAAGTCAACTGGAGGAAAGGCTCCG
AGGAAGCAGCTCGCCACAAAGGCTGCAAGAAAATCTGCTCCAACAACTGG
TGGAGTCAAGAAGCCTCATCGTTACCGTCCAGGAACTGTCGCCCTCCGTG
AAATCCGCAAATATCAGAAGAGCACTGAGCTTTTGATCCGCAAGCTGCCT
TTTCAGCGGCTGGTTCGTGAAATTGCTCAAGATTTCAAGACAGATTTGAG
GATCCAAAGCCACGCGGTTCTTGCGC
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