CX291691 | Citrus Genome Database

Overview


Name	CX291691
Unique Name	CX291691
Type	EST
Organism	Citrus clementina (Clementine)
Sequence length	554

Libraries


Library Name	Type
FlavFr1	cdna_library

Analyses

This EST is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST: Citrus ESTs to Prunus persica proteins V1	2010-05-10
BLAST: Citrus ESTs to Populus V2 proteins	2010-05-10
BLAST: Citrus ESTs to TAIR9	2010-05-10
BLAST: Citrus ESTs to SwissProt	2010-05-10

Alignments

Feature Name	Type	Location	Analysis
Ccv1_Contig1027	contig	Ccv1_Contig1027:443..996.	BLAST: Citrus Unigene V1 Contigs to Prunus persica proteins V1

Homology

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_CAMDR (Ubiquitin OS=Camelus dromedarius PE=3 SV=2)

HSP 1 Score: 145.976 bits (367), Expect = 1.167e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_BOVIN (Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1)

HSP 1 Score: 145.976 bits (367), Expect = 1.167e-34
Identity = 73/76 (96.05%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_TETPY (Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.524e-34
Identity = 72/76 (94.74%), Postives = 76/76 (100.00%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITL+VE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_SHEEP (Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2)

HSP 1 Score: 145.206 bits (365), Expect = 1.990e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITLEVE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

HSP 2 Score: 76.2554 bits (186), Expect = 1.135e-13
Identity = 36/38 (94.74%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLR+RGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRMRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_EIMBO (Ubiquitin OS=Eimeria bovis PE=2 SV=1)

HSP 1 Score: 144.821 bits (364), Expect = 2.599e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITL+VE SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_TRYBB (Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.395e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTI LEVE+SDTI+NVKAKIQDKEGIPPDQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTIALEVEASDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 76.6406 bits (187), Expect = 8.693e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLE+GRTLADYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEEGRTLADYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_STRPU (Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.395e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_ENCCU (Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_0740i PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.395e-34
Identity = 72/76 (94.74%), Postives = 75/76 (98.68%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITLEVE SD+I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEPSDSIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_DICDI (Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.395e-34
Identity = 72/76 (94.74%), Postives = 74/76 (97.37%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITLEVE SD I+NVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLEVEGSDNIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

[Close]

BLAST of CX291691 vs. ExPASy Swiss-Prot
Match: UBIQ_PHYIN (Ubiquitin OS=Phytophthora infestans PE=1 SV=1)

HSP 1 Score: 142.895 bits (359), Expect = 9.877e-34
Identity = 71/76 (93.42%), Postives = 74/76 (97.37%), Query Frame = 3

Query:  117 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 344
            MQIFVKTLTGKTITL+VE SD+IDNVK KIQDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:    1 MQIFVKTLTGKTITLDVEPSDSIDNVKQKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

HSP 2 Score: 77.0258 bits (188), Expect = 6.656e-14
Identity = 37/38 (97.37%), Postives = 38/38 (100.00%), Query Frame = 3

Query:    3 DQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGG 116
            DQQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGG
Sbjct:   39 DQQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGG 76

The following BLAST results are available for this feature:

BLAST of CX291691 vs. ExPASy Swiss-Prot

BLAST of CX291691 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 94


Match Name	E-value	Identity	Description
UBIQ_CAMDR	1.167e-34	96.05	Ubiquitin OS=Camelus dromedarius PE=3 SV=2	[more]
UBIQ_BOVIN	1.167e-34	96.05	Ubiquitin OS=Bos taurus GN=RPS27A PE=1 SV=1	[more]
UBIQ_TETPY	1.524e-34	94.74	Ubiquitin OS=Tetrahymena pyriformis GN=TUF11 PE=3 ...	[more]
UBIQ_SHEEP	1.990e-34	94.74	Ubiquitin OS=Ovis aries GN=UBA52 PE=3 SV=2	[more]
UBIQ_EIMBO	2.599e-34	94.74	Ubiquitin OS=Eimeria bovis PE=2 SV=1	[more]
UBIQ_TRYBB	3.395e-34	94.74	Ubiquitin OS=Trypanosoma brucei brucei PE=3 SV=1	[more]
UBIQ_STRPU	3.395e-34	94.74	Ubiquitin OS=Strongylocentrotus purpuratus PE=3 SV...	[more]
UBIQ_ENCCU	3.395e-34	94.74	Ubiquitin OS=Encephalitozoon cuniculi GN=ECU02_074...	[more]
UBIQ_DICDI	3.395e-34	94.74	Ubiquitin OS=Dictyostelium discoideum GN=ubqA PE=1...	[more]
UBIQ_PHYIN	9.877e-34	93.42	Ubiquitin OS=Phytophthora infestans PE=1 SV=1	[more]

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Properties


Property Name	Value
Genbank description	C04002C08SK FlavFr1 Citrus clementina cDNA clone C04002C08, mRNA sequence.

Sequences

The following sequences are available for this feature:

EST sequence

EST sequence

>CX291691 ID=CX291691; Name=CX291691; organism=Citrus clementina; type=EST; length=554bp
CGGACCAGCAGAGGCTCATCTTCGCCGGCAAGCAGCTGGAGGACGGCCGC
ACCCTGGCCGATTATAACATCCAGAAGGAATCCACGCTCCACCTTGTGTT
GCGCCTGAGGGGAGGAATGCAGATCTTCGTCAAGACGTTGACCGGGAAGA
CGATTACCCTGGAGGTGGAGAGCTCCGACACGATCGACAACGTGAAGGCC
AAGATCCAGGACAAAGAGGGGATTCCTCCGGACCAGCAGAGGCTCATCTT
CGCCGGCAAGCAGCTCGAGGATGGCCGGACTCTCGCCGATTACAACATTC
AAAAGGAGTCCACTCTCCACCTTGTCCTCCGTCTCCGTGGTGGTGACTTC
TAAAAAAATATATGTGGATGTGTCCGCGTTTGATTGGATGGCGCTAATAA
TAATTAATTAGGTTGGATTGGGCGCTTTGCTTTAATTATTTTGTAATTAC
AATTGTGTAATGGCCAGCCGCTTGGGCCTAATTTCCTCTTTCTATCAGCA
ATAATAATATAAGCAGCAGTTTTTAAATAAAAAAAAAAAAAAAAAACTCG
AGGG