CX291709

Overview
NameCX291709
Unique NameCX291709
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length512
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291709 vs. ExPASy Swiss-Prot
Match: AB33G_ARATH (ABC transporter G family member 33 OS=Arabidopsis thaliana GN=ABCG33 PE=2 SV=1)

HSP 1 Score: 85.1149 bits (209), Expect = 2.023e-16
Identity = 36/112 (32.14%), Postives = 67/112 (59.82%), Query Frame = -1 
Query:  177 ATIVLSFFLALWNLFAGFMIPRQEIPVWWRWYYWLSPVAWNLYGLVTCQVGDVKTQVQIPNGTSMTVKQFVKDNCDYKTDFIPVVAVVHLAWIAVFLFVFAYAIKSVNFQRR 512
            A I+ S F   +N+FAGF+IP+ +IP WW W+Y+++P +W L    + Q GD+  ++    G + TV  F++D   +  D + + A++ +A+      ++A+ +  +NFQ+R
Sbjct: 1303 AAILQSLFFTTFNIFAGFLIPKPQIPKWWVWFYYITPTSWTLNLFFSSQYGDIHQKIN-AFGETKTVASFLEDYFGFHHDRLMITAIILIAFPIALATMYAFFVAKLNFQKR 1413
The following BLAST results are available for this feature:
BLAST of CX291709 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 31
Match NameE-valueIdentityDescription
AB33G_ARATH2.023e-1632.14ABC transporter G family member 33 OS=Arabidopsis ... [more]

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Properties
Property NameValue
Genbank descriptionC04002E12SK FlavFr1 Citrus clementina cDNA clone C04002E12, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291709 ID=CX291709; Name=CX291709; organism=Citrus clementina; type=EST; length=512bp
TTTTTTTTTTTTTTTTTTTTTTGCAAAAATTAAACTTCTTTATTCATTTA
ATTTTCATAAAAGAATACATTGGATTCCATATCACAATTTCTACTTAAAA
GTCAAGTAACAAGCAAAATTGAAAGATTACAATTCTAAGAATAGGTAGCA
TTCTAAAGATTTGAGCTACAGGTTTATCTCCTTTGGAAGTTGACGGACTT
GATGGCATAGGCAAACACAAATAAGAAGACGGCAATCCAGGCAAGATGCA
CAACAGCGACCACAGGAATGAAATCAGTCTTGTAATCGCAATTATCTTTG
ACAAATTGCTTCACTGTCATTGAAGTGCCATTAGGGATCTGCACCTGTGT
CTTTACGTCACCAACTTGACAAGTCACAAGGCCATACAGATTCCAAGCCA
CCGGAGAAAGCCAGTAGTACCACCTCCACCAGACAGGAATTTCCTGTCTG
GGAATCATGAAACCGGCGAACAAGTTCCATAGTGCAAGGAAGAAGGACAA
GACAATGGTAGC
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