CX291755

Overview
NameCX291755
Unique NameCX291755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIK_YARLI (3-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia lipolytica GN=POT1 PE=3 SV=1)

HSP 1 Score: 181.415 bits (459), Expect = 2.675e-45
Identity = 93/150 (62.00%), Postives = 116/150 (77.33%), Query Frame = 3
Query:   18 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAV 467
            T AGNASQ+SDGAGAVLLM+RS+A + G PIL  F     VGV P +MGIGPA AIPA ++  GL ++D+++FEINEAFASQ ++ I+  G+D  KVN  GGA+A+GHPLGATGAR  ATLLSE+K  GK  + GV SMCIG+GMGAA++
Sbjct:  263 THAGNASQISDGAGAVLLMRRSVAEKLGQPILAKFVHCKTVGVPPELMGIGPAYAIPAVLEDLGLTVNDVDVFEINEAFASQALFSIQHCGIDESKVNPRGGAIAIGHPLGATGARQFATLLSELKESGK--KVGVTSMCIGTGMGAASL 410          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIKB_CANTR (3-ketoacyl-CoA thiolase B, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.468e-43
Identity = 89/153 (58.17%), Postives = 114/153 (74.51%), Query Frame = 3
Query:   18 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TTAGNASQVSDGA AVLLMKRSLA  KG PI+G +   S  GV P +MG+GPA AIP  +K  GL +DDI++FEINEAFA+Q +Y  +++ +  EK+N+NGGA+ALGHPLG TGAR  AT++  +    K  + G+ SMCIGSGMG+A++  R
Sbjct:  259 TTAGNASQVSDGAAAVLLMKRSLAEAKGYPIIGKYVLCSTAGVPPEIMGVGPAFAIPEVLKRTGLTVDDIDVFEINEAFAAQCLYSAEQVNVPEEKLNINGGAIALGHPLGETGARQYATIIPLL----KPGQIGLTSMCIGSGMGSASILVR 407          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIKA_CANTR (3-ketoacyl-CoA thiolase A, peroxisomal OS=Candida tropicalis PE=3 SV=1)

HSP 1 Score: 175.637 bits (444), Expect = 1.468e-43
Identity = 89/153 (58.17%), Postives = 114/153 (74.51%), Query Frame = 3
Query:   18 TTAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TTAGNASQVSDGA AVLLMKRSLA  KG PI+G +   S  GV P +MG+GPA AIP  +K  GL +DDI++FEINEAFA+Q +Y  +++ +  EK+N+NGGA+ALGHPLG TGAR  AT++  +    K  + G+ SMCIGSGMG+A++  R
Sbjct:  259 TTAGNASQVSDGAAAVLLMKRSLAEAKGYPIIGKYVLCSTAGVPPEIMGVGPAYAIPEVLKRTGLTVDDIDVFEINEAFAAQCLYSAEQVNVPEEKLNINGGAIALGHPLGETGARQYATIIPLL----KPGQIGLTSMCIGSGMGSASILVR 407          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_PECCP (3-ketoacyl-CoA thiolase OS=Pectobacterium carotovorum subsp. carotovorum (strain PC1) GN=fadA PE=3 SV=1)

HSP 1 Score: 162.155 bits (409), Expect = 1.680e-39
Identity = 86/155 (55.48%), Postives = 108/155 (69.68%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG++S +SDGA A+L+M  S A   GLP+    R+ + VG DPS+MG GP  A   A+K AGL + DI LFE+NEAFA+Q + CIK LGL     EKVN+NGGA+ALGHPLG +GAR   TL++ M+ R  D +FGV +MCIG G G A VFER
Sbjct:  234 TAGSSSALSDGAAAMLIMSESRAASLGLPVRARIRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLSDIGLFELNEAFAAQTLPCIKDLGLLEQIDEKVNLNGGAIALGHPLGCSGARISTTLINLMESR--DVQFGVATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_VIBFM (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain MJ11) GN=fadA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.887e-39
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG++S +SDGA A+L+M    A + GLPI    RS +  G DPS+MG GP  A   A+K AGL +DDI LFE+NEAFA+Q + CIK LGL     EKVN+NGGA+ALGHPLG +G+R   TL++ M+R G   + GV +MCIG G G A VFER
Sbjct:  234 TAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQSLPCIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLINNMERTG--AKLGVATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_VIBF1 (3-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain ATCC 700601 / ES114) GN=fadA PE=3 SV=2)

HSP 1 Score: 160.614 bits (405), Expect = 4.887e-39
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG++S +SDGA A+L+M    A + GLPI    RS +  G DPS+MG GP  A   A+K AGL +DDI LFE+NEAFA+Q + CIK LGL     EKVN+NGGA+ALGHPLG +G+R   TL++ M+R G   + GV +MCIG G G A VFER
Sbjct:  234 TAGSSSALSDGASAMLVMSEEKANELGLPIRAKVRSMAVSGCDPSIMGYGPVPATKKALKRAGLSLDDIELFELNEAFAAQSLPCIKDLGLLDVMDEKVNLNGGAIALGHPLGCSGSRIATTLINNMERTG--AKLGVATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ERWT9 (3-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (strain DSM 17950 / Et1/99) GN=fadA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.887e-39
Identity = 88/155 (56.77%), Postives = 109/155 (70.32%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLD---PEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG++S +SDGA A+L+M  S A Q+GL      RS + VG DPS+MG GP  A   A+K AGL I DI +FE+NEAFA+Q + CIK LGL     EKVN+NGGA+ALGHPLG +GAR   TLL+ M+RR  D +FG+ +MCIG G G A VFER
Sbjct:  234 TAGSSSALSDGAAAMLIMSGSQARQQGLKARARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLSIADIGVFELNEAFAAQTLPCIKDLGLMDKLDEKVNLNGGAIALGHPLGCSGARISTTLLNLMERR--DAQFGLATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ERWCT (3-ketoacyl-CoA thiolase OS=Erwinia carotovora subsp. atroseptica GN=fadA PE=3 SV=1)

HSP 1 Score: 160.614 bits (405), Expect = 4.887e-39
Identity = 85/155 (54.84%), Postives = 108/155 (69.68%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG++S +SDGA A+L+M  S A   GLP+    R+ + VG DPS+MG GP  A   A+K AGL + DI +FE+NEAFA+Q + CIK LGL     EKVN+NGGA+ALGHPLG +GAR   TL++ M+ R  D +FGV +MCIG G G A VFER
Sbjct:  234 TAGSSSALSDGASAMLIMSESRAASLGLPVRARIRAMAVVGCDPSIMGYGPVPATKLALKRAGLSLADIGIFELNEAFAAQTLPCIKDLGLLEQLDEKVNLNGGAIALGHPLGCSGARISTTLINLMESR--DAQFGVATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIK_ENCCU (3-ketoacyl-CoA thiolase, peroxisomal OS=Encephalitozoon cuniculi GN=FOX3 PE=1 SV=1)

HSP 1 Score: 159.458 bits (402), Expect = 1.089e-38
Identity = 82/152 (53.95%), Postives = 109/152 (71.71%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            T+ N+SQ+SDGA AVLLMKR  A + GLP++  F  F AVG+ P  MG+GP VAI   +K  GL+ D I+ FEINEAFASQ + C++KL +  ++VN  GG++ALGHP+GA+GAR V TLLS MK    +  +GV S+C+G+G G AA+F R
Sbjct:  229 TSANSSQLSDGASAVLLMKRRRADELGLPVVAEFIDFIAVGLKPRDMGLGPVVAIEKLLKRNGLEKDQISYFEINEAFASQVLCCLRKLQIGEDRVNRYGGSIALGHPIGASGARIVCTLLSVMKNEALE-GYGVASLCVGAGHGVAALFRR 379          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SERP5 (3-ketoacyl-CoA thiolase OS=Serratia proteamaculans (strain 568) GN=fadA PE=3 SV=1)

HSP 1 Score: 158.688 bits (400), Expect = 1.857e-38
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+LLM  S A   GL      RS + VG DPS+MG GP  A   A+K AGL + DI+LFE+NEAFA+Q + CIK LGL     +K+N+NGGA+ALGHPLG +G+R   TLL+ M+RR  D +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLLMSESRAKALGLKARARIRSMAVVGCDPSIMGYGPVPASKLALKRAGLSVQDIDLFELNEAFAAQSLPCIKDLGLLDSIDDKINLNGGAIALGHPLGCSGSRISTTLLNNMERR--DVQFGLATMCIGLGQGIATVFER 386          
The following BLAST results are available for this feature:
BLAST of CX291755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
THIK_YARLI2.675e-4562.003-ketoacyl-CoA thiolase, peroxisomal OS=Yarrowia l... [more]
THIKB_CANTR1.468e-4358.173-ketoacyl-CoA thiolase B, peroxisomal OS=Candida ... [more]
THIKA_CANTR1.468e-4358.173-ketoacyl-CoA thiolase A, peroxisomal OS=Candida ... [more]
FADA_PECCP1.680e-3955.483-ketoacyl-CoA thiolase OS=Pectobacterium carotovo... [more]
FADA_VIBFM4.887e-3954.843-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_VIBF14.887e-3954.843-ketoacyl-CoA thiolase OS=Vibrio fischeri (strain... [more]
FADA_ERWT94.887e-3956.773-ketoacyl-CoA thiolase OS=Erwinia tasmaniensis (s... [more]
FADA_ERWCT4.887e-3954.843-ketoacyl-CoA thiolase OS=Erwinia carotovora subs... [more]
THIK_ENCCU1.089e-3853.953-ketoacyl-CoA thiolase, peroxisomal OS=Encephalit... [more]
FADA_SERP51.857e-3854.843-ketoacyl-CoA thiolase OS=Serratia proteamaculans... [more]

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Properties
Property NameValue
Genbank descriptionC04004C05SK FlavFr1 Citrus clementina cDNA clone C04004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291755 ID=CX291755; Name=CX291755; organism=Citrus clementina; type=EST; length=569bp
GAATTCGGCACGAGGCGACAACTGCTGGGAATGCTAGCCAGGTCAGTGAT
GGAGCTGGAGCAGTTCTTCTTATGAAGAGAAGTTTGGCTGTGCAGAAGGG
TCTTCCAATTCTTGGTGTGTTCAGGAGTTTTTCTGCTGTTGGTGTAGATC
CTTCTGTCATGGGCATAGGCCCAGCTGTTGCAATACCTGCTGCAGTGAAG
TCTGCAGGTCTTCAGATTGATGATATTAATTTGTTTGAGATAAATGAGGC
ATTTGCATCCCAGTATGTTTATTGTATTAAGAAACTGGGGCTTGATCCTG
AAAAAGTCAATGTTAATGGAGGTGCAGTGGCTCTTGGGCATCCTCTGGGT
GCGACAGGTGCACGCTGTGTTGCAACTCTATTGAGTGAGATGAAGCGTCG
TGGCAAAGATTGTCGATTTGGAGTGATCTCCATGTGCATAGGCTCAGGCA
TGGGGGCTGCAGCAGTTTTCGAGAGAGGAGATTGTGTTGACGAACTATGC
AATGCTCGAATGGTTCCAACTCACACCCACTTGTCAAAGGATGCCAAGTA
GATGCATTTGTTTGCAATT
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