CX291755

Overview
NameCX291755
Unique NameCX291755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_YERPA (3-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=fadA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.216e-38
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A   GL      RS + VG DPS+MG GP  A   A+K AGL++ DI LFE+NEAFA+Q + C+K LGL     +KVN+NGGA+ALGHPLG +GAR   TLL+ M+RR  D +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERR--DVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_YERP3 (3-ketoacyl-CoA thiolase OS=Yersinia pseudotuberculosis serotype O:1b (strain IP 31758) GN=fadA PE=3 SV=1)

HSP 1 Score: 156.377 bits (394), Expect = 9.216e-38
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A   GL      RS + VG DPS+MG GP  A   A+K AGL++ DI LFE+NEAFA+Q + C+K LGL     +KVN+NGGA+ALGHPLG +GAR   TLL+ M+RR  D +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLIMSESRAKSLGLTPRARIRSMAVVGCDPSIMGYGPVPASQLALKRAGLELADIGLFELNEAFAAQSLACLKGLGLLESMDDKVNLNGGAIALGHPLGCSGARISTTLLNLMERR--DVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SALTY (3-ketoacyl-CoA thiolase OS=Salmonella typhimurium GN=fadA PE=1 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI++FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER--KDAQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SALTI (3-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fadA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI++FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER--KDAQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SALPA (3-ketoacyl-CoA thiolase OS=Salmonella paratyphi A GN=fadA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI++FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER--KDAQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SALCH (3-ketoacyl-CoA thiolase OS=Salmonella choleraesuis GN=fadA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI++FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLKPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER--KDAQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ESCF3 (3-ketoacyl-CoA thiolase OS=Escherichia fergusonii (strain ATCC 35469 / DSM 13698 / CDC 0568-73) GN=fadA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 85/155 (54.84%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG++S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGSSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ECO24 (3-ketoacyl-CoA thiolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 155.992 bits (393), Expect = 1.204e-37
Identity = 84/155 (54.19%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DP++MG GP  A   A+K AGL + DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPAIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHIFL (3-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fadA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.572e-37
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHIF8 (3-ketoacyl-CoA thiolase OS=Shigella flexneri serotype 5b (strain 8401) GN=fadA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.572e-37
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
The following BLAST results are available for this feature:
BLAST of CX291755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_YERPA9.216e-3854.843-ketoacyl-CoA thiolase OS=Yersinia pestis bv. Ant... [more]
FADA_YERP39.216e-3854.843-ketoacyl-CoA thiolase OS=Yersinia pseudotubercul... [more]
FADA_SALTY1.204e-3754.193-ketoacyl-CoA thiolase OS=Salmonella typhimurium ... [more]
FADA_SALTI1.204e-3754.193-ketoacyl-CoA thiolase OS=Salmonella typhi GN=fad... [more]
FADA_SALPA1.204e-3754.193-ketoacyl-CoA thiolase OS=Salmonella paratyphi A ... [more]
FADA_SALCH1.204e-3754.193-ketoacyl-CoA thiolase OS=Salmonella choleraesuis... [more]
FADA_ESCF31.204e-3754.843-ketoacyl-CoA thiolase OS=Escherichia fergusonii ... [more]
FADA_ECO241.204e-3754.193-ketoacyl-CoA thiolase OS=Escherichia coli O139:H... [more]
FADA_SHIFL1.572e-3754.843-ketoacyl-CoA thiolase OS=Shigella flexneri GN=fa... [more]
FADA_SHIF81.572e-3754.843-ketoacyl-CoA thiolase OS=Shigella flexneri serot... [more]

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Properties
Property NameValue
Genbank descriptionC04004C05SK FlavFr1 Citrus clementina cDNA clone C04004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291755 ID=CX291755; Name=CX291755; organism=Citrus clementina; type=EST; length=569bp
GAATTCGGCACGAGGCGACAACTGCTGGGAATGCTAGCCAGGTCAGTGAT
GGAGCTGGAGCAGTTCTTCTTATGAAGAGAAGTTTGGCTGTGCAGAAGGG
TCTTCCAATTCTTGGTGTGTTCAGGAGTTTTTCTGCTGTTGGTGTAGATC
CTTCTGTCATGGGCATAGGCCCAGCTGTTGCAATACCTGCTGCAGTGAAG
TCTGCAGGTCTTCAGATTGATGATATTAATTTGTTTGAGATAAATGAGGC
ATTTGCATCCCAGTATGTTTATTGTATTAAGAAACTGGGGCTTGATCCTG
AAAAAGTCAATGTTAATGGAGGTGCAGTGGCTCTTGGGCATCCTCTGGGT
GCGACAGGTGCACGCTGTGTTGCAACTCTATTGAGTGAGATGAAGCGTCG
TGGCAAAGATTGTCGATTTGGAGTGATCTCCATGTGCATAGGCTCAGGCA
TGGGGGCTGCAGCAGTTTTCGAGAGAGGAGATTGTGTTGACGAACTATGC
AATGCTCGAATGGTTCCAACTCACACCCACTTGTCAAAGGATGCCAAGTA
GATGCATTTGTTTGCAATT
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