CX291755

Overview
NameCX291755
Unique NameCX291755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ECOLI (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain K12) GN=fadA PE=1 SV=3)

HSP 1 Score: 155.606 bits (392), Expect = 1.572e-37
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ECOL6 (3-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=fadA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.572e-37
Identity = 85/155 (54.84%), Postives = 105/155 (67.74%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A   GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARDLGLKPRACVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ECOHS (3-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 (strain HS) GN=fadA PE=3 SV=1)

HSP 1 Score: 155.606 bits (392), Expect = 1.572e-37
Identity = 85/155 (54.84%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHIDS (3-ketoacyl-CoA thiolase OS=Shigella dysenteriae serotype 1 (strain Sd197) GN=fadA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.053e-37
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL + DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+   KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEH--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ECO57 (3-ketoacyl-CoA thiolase OS=Escherichia coli O157:H7 GN=fadA PE=3 SV=1)

HSP 1 Score: 155.221 bits (391), Expect = 2.053e-37
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL + DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+   KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSVSDIGVFEMNEAFAAQILPCIKDLGLIEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEH--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ENTS8 (3-ketoacyl-CoA thiolase OS=Enterobacter sakazakii (strain ATCC BAA-894) GN=fadA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.574e-37
Identity = 84/155 (54.19%), Postives = 105/155 (67.74%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI+LFE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+RR  D   G+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLTPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASDIDLFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMERR--DAELGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ENT38 (3-ketoacyl-CoA thiolase OS=Enterobacter sp. (strain 638) GN=fadA PE=3 SV=1)

HSP 1 Score: 154.066 bits (388), Expect = 4.574e-37
Identity = 83/155 (53.55%), Postives = 107/155 (69.03%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   +I++FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLTPRARIRSMAVVGCDPSIMGYGPVPASKLALKKAGLTASEIDVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLINLMER--KDAQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHISS (3-ketoacyl-CoA thiolase OS=Shigella sonnei (strain Ss046) GN=fadA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.974e-37
Identity = 84/155 (54.19%), Postives = 105/155 (67.74%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+   KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEH--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHIBS (3-ketoacyl-CoA thiolase OS=Shigella boydii serotype 4 (strain Sb227) GN=fadA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.974e-37
Identity = 84/155 (54.19%), Postives = 106/155 (68.39%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG +PS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+R  KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRAHELGLKPRARVRSMAVVGCNPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMER--KDVQFGLATMCIGLGQGIATVFER 386
[Close]
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_ECOUT (3-ketoacyl-CoA thiolase OS=Escherichia coli (strain UTI89 / UPEC) GN=fadA PE=3 SV=1)

HSP 1 Score: 153.68 bits (387), Expect = 5.974e-37
Identity = 84/155 (54.19%), Postives = 105/155 (67.74%), Query Frame = 3 
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M  S A + GL      RS + VG DPS+MG GP  A   A+K AGL   DI +FE+NEAFA+Q + CIK LGL     EK+N+NGGA+ALGHPLG +GAR   TLL+ M+   KD +FG+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGAAAMLVMSESRARELGLKPRARVRSMAVVGCDPSIMGYGPVPASKLALKKAGLSASDIGVFEMNEAFAAQILPCIKDLGLMEQIDEKINLNGGAIALGHPLGCSGARISTTLLNLMEH--KDVQFGLATMCIGLGQGIATVFER 386
The following BLAST results are available for this feature:
BLAST of CX291755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_ECOLI1.572e-3754.843-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]
FADA_ECOL61.572e-3754.843-ketoacyl-CoA thiolase OS=Escherichia coli O6 GN=... [more]
FADA_ECOHS1.572e-3754.843-ketoacyl-CoA thiolase OS=Escherichia coli O9:H4 ... [more]
FADA_SHIDS2.053e-3754.193-ketoacyl-CoA thiolase OS=Shigella dysenteriae se... [more]
FADA_ECO572.053e-3754.193-ketoacyl-CoA thiolase OS=Escherichia coli O157:H... [more]
FADA_ENTS84.574e-3754.193-ketoacyl-CoA thiolase OS=Enterobacter sakazakii ... [more]
FADA_ENT384.574e-3753.553-ketoacyl-CoA thiolase OS=Enterobacter sp. (strai... [more]
FADA_SHISS5.974e-3754.193-ketoacyl-CoA thiolase OS=Shigella sonnei (strain... [more]
FADA_SHIBS5.974e-3754.193-ketoacyl-CoA thiolase OS=Shigella boydii serotyp... [more]
FADA_ECOUT5.974e-3754.193-ketoacyl-CoA thiolase OS=Escherichia coli (strai... [more]

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Properties
Property NameValue
Genbank descriptionC04004C05SK FlavFr1 Citrus clementina cDNA clone C04004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291755 ID=CX291755; Name=CX291755; organism=Citrus clementina; type=EST; length=569bp
GAATTCGGCACGAGGCGACAACTGCTGGGAATGCTAGCCAGGTCAGTGAT
GGAGCTGGAGCAGTTCTTCTTATGAAGAGAAGTTTGGCTGTGCAGAAGGG
TCTTCCAATTCTTGGTGTGTTCAGGAGTTTTTCTGCTGTTGGTGTAGATC
CTTCTGTCATGGGCATAGGCCCAGCTGTTGCAATACCTGCTGCAGTGAAG
TCTGCAGGTCTTCAGATTGATGATATTAATTTGTTTGAGATAAATGAGGC
ATTTGCATCCCAGTATGTTTATTGTATTAAGAAACTGGGGCTTGATCCTG
AAAAAGTCAATGTTAATGGAGGTGCAGTGGCTCTTGGGCATCCTCTGGGT
GCGACAGGTGCACGCTGTGTTGCAACTCTATTGAGTGAGATGAAGCGTCG
TGGCAAAGATTGTCGATTTGGAGTGATCTCCATGTGCATAGGCTCAGGCA
TGGGGGCTGCAGCAGTTTTCGAGAGAGGAGATTGTGTTGACGAACTATGC
AATGCTCGAATGGTTCCAACTCACACCCACTTGTCAAAGGATGCCAAGTA
GATGCATTTGTTTGCAATT
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