CX291755

Overview
NameCX291755
Unique NameCX291755
TypeEST
OrganismCitrus clementina (Clementine)
Sequence length569
Libraries
Library NameType
FlavFr1cdna_library
Analyses
This EST is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST: Citrus ESTs to Prunus persica proteins V12010-05-10
BLAST: Citrus ESTs to Populus V2 proteins2010-05-10
BLAST: Citrus ESTs to TAIR92010-05-10
BLAST: Citrus ESTs to SwissProt2010-05-10
Homology
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHEON (3-ketoacyl-CoA thiolase OS=Shewanella oneidensis GN=fadA PE=3 SV=1)

HSP 1 Score: 145.591 bits (366), Expect = 1.627e-34
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M+ S A   GLPI    RS +  G D ++MG GP  A   A+  AG+ ++D+++ E+NEAFA+Q + C+K LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+   KD   G+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLIMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEH--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIL_RALEH (Acetyl-CoA acetyltransferase OS=Ralstonia eutropha (strain ATCC 17699 / H16 / DSM 428 / Stanier 337) GN=phbA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.125e-34
Identity = 76/152 (50.00%), Postives = 102/152 (67.11%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TA NAS ++DGA AV++M  + A + GL  L   +S++  GVDP VMG+GP  A   A+  A     D++L EINEAFA+Q +   +++G D  KVNVNGGA+A+GHP+GA+G R + TLL EMKRR  D + G+ S+CIG GMG A   ER
Sbjct:  243 TAANASGLNDGAAAVVVMSAAKAKELGLTPLATIKSYANAGVDPKVMGMGPVPASKRALSRAEWTPQDLDLMEINEAFAAQALAVHQQMGWDTSKVNVNGGAIAIGHPIGASGCRILVTLLHEMKRR--DAKKGLASLCIGGGMGVALAVER 392          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHESR (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-7) GN=fadA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.125e-34
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M+ S A   GLPI    RS +  G D ++MG GP  A   A+  AG+ ++D+++ E+NEAFA+Q + C+K LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+   KD   G+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLVMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEH--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHESM (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain MR-4) GN=fadA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.125e-34
Identity = 76/155 (49.03%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M+ S A   GLPI    RS +  G D ++MG GP  A   A+  AG+ ++D+++ E+NEAFA+Q + C+K LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+   KD   G+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLVMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEH--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_PSESM (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. tomato GN=fadA PE=3 SV=1)

HSP 1 Score: 145.206 bits (365), Expect = 2.125e-34
Identity = 80/155 (51.61%), Postives = 103/155 (66.45%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLG-LDP--EKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +SQ++DGA  +++M    A   G+  L V RS +  GVDP++MG GP  A   A+K AGL I DI+ FE+NEAFA+Q +  +K L  LD   EKVN++GGA+ALGHP G +GAR   TLL+ MK+ G    FGV +MCIG G G A VFER
Sbjct:  238 TAGTSSQITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSISDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVSTMCIGLGQGIATVFER 390          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHEFN (3-ketoacyl-CoA thiolase OS=Shewanella frigidimarina (strain NCIMB 400) GN=fadA PE=3 SV=1)

HSP 1 Score: 144.436 bits (363), Expect = 3.624e-34
Identity = 77/155 (49.68%), Postives = 102/155 (65.81%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLD---PEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M+ S A   GL I    RS +  G D ++MG GP  A   A+  AGL + D++L E+NEAFA+Q + C+K LGL     EK+N+NGGA+ALGHPLG +GAR   TL++ M+   KD   G+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLVMEESKARALGLTIRARIRSMAVAGCDAAIMGYGPVPATKKALARAGLSVADLDLIELNEAFAAQSLPCVKDLGLQDVVDEKINLNGGAIALGHPLGCSGARISTTLINLMEE--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_SHESA (3-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ANA-3) GN=fadA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.733e-34
Identity = 75/155 (48.39%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGL---DPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +S +SDGA A+L+M+ S A   GLPI    RS +  G D ++MG GP  A   A+  AG+ ++D+++ E+NEAFA+Q + C+K LGL     +K+N+NGGA+ALGHPLG +GAR   TL++ M+   KD   G+ +MCIG G G A VFER
Sbjct:  234 TAGTSSALSDGASAMLVMEESKARALGLPIRARIRSMAVAGCDAAIMGYGPVPATQKALARAGITVNDLDVIELNEAFAAQSLPCVKDLGLLDVVEDKINLNGGAIALGHPLGCSGARISTTLINLMEH--KDATLGLATMCIGLGQGIATVFER 386          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_PSEPF (3-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens (strain Pf0-1) GN=fadA PE=3 SV=1)

HSP 1 Score: 144.05 bits (362), Expect = 4.733e-34
Identity = 79/155 (50.97%), Postives = 104/155 (67.10%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLG-LDP--EKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +SQ++DGA  +++M    A   G+  L V RS +  GVDP++MG GP  A   A+K AGL I+DI+ FE+NEAFA+Q +  +K L  LD   EKVN++GGA+ALGHP G +GAR   TLL+ MK+ G    FGV +MCIG G G + VFER
Sbjct:  238 TAGTSSQITDGASCMIVMSAQRAQDLGIQPLAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLGINDIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVATMCIGLGQGISTVFER 390          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: THIM_BOVIN (3-ketoacyl-CoA thiolase, mitochondrial OS=Bos taurus GN=ACAA2 PE=2 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.182e-34
Identity = 74/151 (49.01%), Postives = 95/151 (62.91%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLGLDPEKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFE 473
            TAGNAS VSDGAGAV++       +     L     +   G DP++MGIGP  AI  A+K  GL + D++L E+NEAFA QY+   K L LDP K NVNGGA+ALGHPL  +G+R  A L+ E++RRG   ++ V S CIG G G A + E
Sbjct:  246 TAGNASGVSDGAGAVIIASEDAVKKHNFTPLARIVGYFVSGCDPTIMGIGPVPAISGALKKTGLSLKDMDLVEVNEAFAPQYLAVEKSLNLDPSKTNVNGGAIALGHPLAGSGSRITAHLVHELRRRGG--KYAVGSACIGGGQGIAVIIE 394          
BLAST of CX291755 vs. ExPASy Swiss-Prot
Match: FADA_PSEU2 (3-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv. syringae (strain B728a) GN=fadA PE=3 SV=1)

HSP 1 Score: 143.665 bits (361), Expect = 6.182e-34
Identity = 79/155 (50.97%), Postives = 103/155 (66.45%), Query Frame = 3
Query:   21 TAGNASQVSDGAGAVLLMKRSLAVQKGLPILGVFRSFSAVGVDPSVMGIGPAVAIPAAVKSAGLQIDDINLFEINEAFASQYVYCIKKLG-LDP--EKVNVNGGAVALGHPLGATGARCVATLLSEMKRRGKDCRFGVISMCIGSGMGAAAVFER 476
            TAG +SQ++DGA  +++M    A   G+  + V RS +  GVDP++MG GP  A   A+K AGL I DI+ FE+NEAFA+Q +  +K L  LD   EKVN++GGA+ALGHP G +GAR   TLL+ MK+ G    FGV +MCIG G G A VFER
Sbjct:  238 TAGTSSQITDGASCMIVMSAQRAQDLGIQPMAVIRSMAVAGVDPAIMGYGPVPATQKALKRAGLSIADIDFFELNEAFAAQALPVLKDLKVLDKMNEKVNLHGGAIALGHPFGCSGARISGTLLNVMKQNGG--TFGVSTMCIGLGQGIATVFER 390          
The following BLAST results are available for this feature:
BLAST of CX291755 vs. ExPASy Swiss-Prot
Analysis Date: 2010-05-10 (BLAST: Citrus ESTs to SwissProt)
Total hits: 283
Match NameE-valueIdentityDescription
FADA_SHEON1.627e-3449.033-ketoacyl-CoA thiolase OS=Shewanella oneidensis G... [more]
THIL_RALEH2.125e-3450.00Acetyl-CoA acetyltransferase OS=Ralstonia eutropha... [more]
FADA_SHESR2.125e-3449.033-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_SHESM2.125e-3449.033-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_PSESM2.125e-3451.613-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]
FADA_SHEFN3.624e-3449.683-ketoacyl-CoA thiolase OS=Shewanella frigidimarin... [more]
FADA_SHESA4.733e-3448.393-ketoacyl-CoA thiolase OS=Shewanella sp. (strain ... [more]
FADA_PSEPF4.733e-3450.973-ketoacyl-CoA thiolase OS=Pseudomonas fluorescens... [more]
THIM_BOVIN6.182e-3449.013-ketoacyl-CoA thiolase, mitochondrial OS=Bos taur... [more]
FADA_PSEU26.182e-3450.973-ketoacyl-CoA thiolase OS=Pseudomonas syringae pv... [more]

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Properties
Property NameValue
Genbank descriptionC04004C05SK FlavFr1 Citrus clementina cDNA clone C04004C05, mRNA sequence.
Sequences
The following sequences are available for this feature:

EST sequence

>CX291755 ID=CX291755; Name=CX291755; organism=Citrus clementina; type=EST; length=569bp
GAATTCGGCACGAGGCGACAACTGCTGGGAATGCTAGCCAGGTCAGTGAT
GGAGCTGGAGCAGTTCTTCTTATGAAGAGAAGTTTGGCTGTGCAGAAGGG
TCTTCCAATTCTTGGTGTGTTCAGGAGTTTTTCTGCTGTTGGTGTAGATC
CTTCTGTCATGGGCATAGGCCCAGCTGTTGCAATACCTGCTGCAGTGAAG
TCTGCAGGTCTTCAGATTGATGATATTAATTTGTTTGAGATAAATGAGGC
ATTTGCATCCCAGTATGTTTATTGTATTAAGAAACTGGGGCTTGATCCTG
AAAAAGTCAATGTTAATGGAGGTGCAGTGGCTCTTGGGCATCCTCTGGGT
GCGACAGGTGCACGCTGTGTTGCAACTCTATTGAGTGAGATGAAGCGTCG
TGGCAAAGATTGTCGATTTGGAGTGATCTCCATGTGCATAGGCTCAGGCA
TGGGGGCTGCAGCAGTTTTCGAGAGAGGAGATTGTGTTGACGAACTATGC
AATGCTCGAATGGTTCCAACTCACACCCACTTGTCAAAGGATGCCAAGTA
GATGCATTTGTTTGCAATT
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